Sylvia atricapilla (blackcap): 136375644
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Entry
136375644 CDS
T10263
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
sati Sylvia atricapilla (blackcap)
Pathway
sati03015
mRNA surveillance pathway
Brite
Transcription machinery [BR:
sati03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
136375644 (PCF11)
Messenger RNA biogenesis [BR:
sati03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
136375644 (PCF11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
136375644
NCBI-ProteinID:
XP_066197370
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Position
2:complement(32969932..32990665)
Genome browser
AA seq
1699 aa
AA seq
DB search
MSAPESSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESNAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSSIASVPAPSKQHMSPTPHMTVKPPHQTAVQSEKIKPSPSPPLHDIKMVNRDPRLNRM
GQHSSHTKDQSHRKEFSPSVTTQSETKGNKTAQAEKQNSTKSEKSKASEKTQKKELEQSK
AKSKSPSPLKNKLPDTKDSKSQECESTKVSDISKRDPRLKRHLQDKSEGKEEEVKEKRRS
TEKKEKEEHKTCEHRPVGSRNKVINGAVQKQDTATEESEKQGGKQGRSSSRKRSRSRSPK
ARSPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKIRQIGPKQSHVEEGTQAARDERNSN
KRNVKQEVRDPRRLKKAQEERPQETATQHSAKASPDPKENAENWQGSKSGKRWKSGWEES
KNSQQNDEHQALVKSPHQRHRENWPAGKGILSPRAPKQQHRLSVDANLQIPKELTSASKR
ELLKKANDRLTSGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCGLKKKPLLS
DAELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHIPDALLSGIECEQAKAKRGVQFD
RKEPFAERSRRHSPVSGTTRPFAENLSPLESRRRLEDQRPTKGARGSDPYDSWGESDEFR
DALRQQGKGTAEFQKIDGDALCRFDNREERQLLGQAGVREEPRSPFTERFKRARYEDPEK
APFPESPGSRFGGIEAKQRITALMEDRPLFDGSPRPTAARVGVDGQGSPFVDGPAAGSSS
RIDGPAGQAAMRFEGSLVGASASQFDGPLAGAGGAGALRFDGPPGQLGGALRFEGPPGQV
GGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFEGPHGQPSGGLRFEGPHGQPM
GPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPMGPHGQLGGGLRFEGPHGQPM
GPHGPSSGGLRFEGPHGPSGGGRLEGPRGQPGLGPRLIDGPVHQGAGGLRFDGPIGRAGP
RFDGCHGAGFDGQPGQLSLLQRFDGIHGQPGPRLAPGQQGQARFETAIPQRFDGPHQPGS
RFDLPLGLQGSRFENVANHPASRLEMSPYGQGGPFVEHPGQGYNGPAHGMQFQRPDIFDG
SPGPNFNGPAGPGAQNFALRGAGHYFEEKGLQGPQYGSFSNMPMGSNQVSLMSAQPGPYG
QGQQYLPNPGSFVQNPAGALSHSYPDNHLGQVDVNELFAKLLKTGILKLSKTDSTSAQAN
ETSAQPTAEEEDDDQNEDQNVPDLTNFIVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQ
TDVYADHLDWHYRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHE
EVVLKTQEAAKEKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIY
HPSCYEDYQNTSSFDCTPSPSKTPSENPLNVMLDIVKQETEESCDSPKIKEEPDDTPPAC
AEESTPASTEIKTEPEESV
NT seq
5100 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagagcagcgctggcagcagcgaggcccgggaggacgcgtgccgcgac
taccagtcgtcgctggaggacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggccgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctaccggttatgtacctaatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattgcgctccaca
tgggatgatatttttcctttgaagaaactatatgcacttgatgtcagagtcaactcatta
gatcctgcctggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaacaaatcgccagaggaatctaatgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaagcagttgttagaacttcagcaaaaaaag
ctagagctggagctggaacagactaaagcacagttggctgtatctcttagtgttcagcag
gggtcatctagtatagcttcagttccagcaccttccaagcaacacatgtctcccacacct
catatgacagttaaaccacctcatcagactgctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgatatcaaaatggtaaacagggatcctcggcttaataggatg
ggtcaacattcttctcacactaaagatcagtctcacaggaaagaattttcaccgagtgtg
accactcagtctgagaccaagggaaacaaaacagcacaggctgaaaaacagaactcaacg
aagtcagaaaaatcaaaagcaagtgaaaaaacacagaagaaagaacttgaacagtccaaa
gcaaaatctaaatcgccatcccctttgaaaaataagctgcccgatactaaagacagtaaa
agccaggaatgtgaaagcactaaggtttctgacatcagtaagcgggatccaagactgaaa
agacatcttcaagataagtcagaggggaaggaagaggaggtcaaagaaaagaggagaagt
acagagaagaaggagaaggaggagcataagacatgtgaacatagaccggtggggagcaga
aataaagtgattaacggtgctgttcaaaaacaagacacagctacagaggagtcagaaaag
cagggtggaaaacaaggaagatcaagtagtagaaaacggtcacgatcacgctctcctaag
gcaagatcaccatccacacattctccaaaaagacgagagaggagatcacctaaaagaaga
ctccggagtttatctcctacttcatcaactcctaaaattggaaagatacgtcagataggc
cctaagcagtctcatgttgaagaaggcacacaagcagcaagagatgaaagaaattctaat
aagagaaatgttaaacaagaagtgcgtgatccaaggagattgaaaaaagcccaagaagaa
agaccccaagagacagccacccagcattctgcaaaagcttctccagacccgaaggagaat
gcagaaaactggcagggatccaaatcaggcaagaggtggaaatctggttgggaagaaagt
aaaaactcacagcagaatgatgaacaccaagcacttgttaaatcccctcatcaaagacat
cgggaaaactggcctgctggtaaaggaattctatcaccccgagcaccaaagcagcagcac
cggttaagtgtggatgccaatttacagattcccaaagaattgacatctgcaagtaaaagg
gaattacttaagaaggctaatgaccgcttaacatctggtgaaataacacaagatgaattt
ctcatggtagctcatcagatccgacagctgttccagtatcaggaaggaaagcacagatgt
aatgtctgggatagcccaacagaggaaaaatgtggtttgaaaaagaaacctcttctatcg
gatgcagaattaacatattatgaacataaagctaaactaaaaaggacacaagttcagcat
tcattgtcaaggcttgatctgttggatcctgatgatattttggattatcatatacctgat
gcattgctttctggaatagaatgtgagcaggcaaaagccaagcggggtgtacagtttgac
agaaaagaaccatttgcagaaagatcaaggagacactctcctgtaagtggcactacaaga
ccttttgctgaaaacctgtcaccgcttgagagtcgacgaagacttgaagaccagcgtcct
actaaaggagcaagaggctctgatccttatgacagctggggagaatcagatgaatttaga
gatgctctcagacaacaggggaaaggtacagcagagttccagaaaatagatggagatgca
ctctgtaggtttgataatcgtgaggaaagacagcttcttgggcaagctggtgttcgagag
gaaccaaggtcaccattcactgaacgtttcaaaagagctagatatgaagatccagagaaa
gcaccatttccagaaagtccaggatcaagatttggaggtattgaagcaaagcagaggata
actgcactgatggaagacagacctctgtttgatggctcacctagaccgactgccgcaagg
gttggggtagatggacaaggaagtccttttgttgatggtcctgctgctggttcaagttcc
agaattgatgggccagctggacaggctgctatgagatttgaggggtctttggtgggggca
agtgcatctcagtttgatggaccactggcaggagcagggggagctggagcgctaagattt
gatgggccaccagggcagctgggaggggccctgagatttgaaggacccccaggccaggtt
gggggaggaggtccactgcggtttgagggacctctcgggcctttgcggtttgaggggcct
gcggggcagcctgtgggcggtcctagatttgaaggtcctggagttggtctcaggtttgag
ggtccccatggtcagccttcaggtggtcttaggtttgagggacctcatggtcaacctatg
gggcctcggggtcaaccagggggtggtctcaggtttgagggaccccatggtcagcccttg
gggcctcatggtcaaccagggggtggcctcaggtttgagggaccacatttacagccaatg
ggaccccatggacaacttggaggtggcctcagatttgaggggccacatggtcagcccatg
gggccacatggaccgtcaagtggtgggctcaggtttgaggggccacatgggccatcaggc
ggtgggagattggaaggaccgcgtggtcagccaggtctgggtcctaggttgattgatgga
ccagtccaccagggagctggtggacttagatttgatggtcctattggtcgggctggtccg
agatttgatggctgtcatggagctggatttgatggtcagcctggacagctgtctctcctg
caaagatttgatggaattcatggacagcctggtccaaggttggcacctggccagcaggga
caagcaagattcgaaacagccatacctcaaagatttgatggacctcaccagccaggctct
aggtttgacttgccccttggccttcagggttcacgttttgaaaatgtagctaaccatcct
gcctcaagactagaaatgtcaccatatggacaaggtggcccgtttgttgaacatcctggc
cagggctacaatggaccagctcatggaatgcagttccagagacctgatatatttgatggt
tcgcctggaccaaatttcaatggaccagctggcccaggagcacagaacttcgcactgaga
ggagctggacattactttgaagaaaaaggtctccagggtccccagtatggaagtttcagt
aatatgccaatgggaagtaatcaggtttctctcatgtctgctcaaccaggaccttatggt
caaggtcagcagtatttgccaaatcctggaagtttcgtccagaaccctgcaggagccctt
tctcattcatatcctgataaccaccttggacaggttgatgtgaatgaattgtttgctaaa
ctgctgaaaacagggatcctcaaattgtctaaaactgattccacctcagcacaagcaaac
gaaacatcggcccagccgactgctgaggaagaagatgatgatcagaatgaagatcaaaat
gttccagacctcactaacttcatagttgaagaacttagacagcgttatgatagtgttata
aatcgactgtacactggaattcagtgttactcctgtggaatgagattcactacttcacag
acagatgtttatgcagatcatttagattggcattatcgccagaaccggacagaaaaagat
gttagcagaaaaattacacacaggagatggtactacagtttaacagactggattgaattt
gaagaaatagcagatctagaggagcgtgctaaaagccagttctttgagaaagctcatgaa
gaggttgtgttgaagacacaggaagctgcgaaagagaaggagtttcagagtgtcccagct
ggaccagctggagcggtcgagagctgtgaaatttgccaagaacaatttgaacagtattgg
gatgaggaagaggaggagtggcacctcaagaatgctatcagggtagatgaaaagatttat
catccgtcttgttatgaagattaccagaatacatcatcatttgattgcacaccatctccc
agcaagactccttcagaaaatccactaaatgtaatgttggacattgttaaacaagaaaca
gaggagtcctgtgactcacctaaaatcaaagaagaacctgatgacacccctcctgcctgt
gcagaggagagcacacctgcatctacagaaatcaaaacagaacccgaggagtctgtttaa
DBGET
integrated database retrieval system
