Streptomyces auratus: SU9_024675
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Entry
SU9_024675 CDS
T07630
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sauh
Streptomyces auratus
Pathway
sauh03030
DNA replication
sauh03410
Base excision repair
sauh03420
Nucleotide excision repair
sauh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sauh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SU9_024675 (ligA)
03410 Base excision repair
SU9_024675 (ligA)
03420 Nucleotide excision repair
SU9_024675 (ligA)
03430 Mismatch repair
SU9_024675 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sauh03032
]
SU9_024675 (ligA)
03400 DNA repair and recombination proteins [BR:
sauh03400
]
SU9_024675 (ligA)
Enzymes [BR:
sauh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SU9_024675 (ligA)
DNA replication proteins [BR:
sauh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SU9_024675 (ligA)
DNA repair and recombination proteins [BR:
sauh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SU9_024675 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SU9_024675 (ligA)
MMR (mismatch excision repair)
DNA ligase
SU9_024675 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SU9_024675 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Motif
Other DBs
NCBI-ProteinID:
QTZ94245
UniProt:
J1RTL7
LinkDB
All DBs
Position
5636587..5638803
Genome browser
AA seq
738 aa
AA seq
DB search
MAGEQHAAGSDVPAAAREQHAQLAEQIEEHRFRYYVKDAPVVSDAEFDRLLRSLEALEDE
HPELRTPDSPTQKVAGAYATEFTEVEHRERMLSLDNAFDDEELAGWAERIAGELGGDPRS
AGYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPHRLKGDRIP
DLVEVRGEVYFPMEKFLELNERLVADGKPPFANPRNAAAGSLRQKDPKITASRPLHMVVH
GIGARDGLVIDRQSQAYDLLKEWGLPTAAHNKVVDSLAAVREFIAHYGDAETRRTAVEHE
IDGVVVKLDEIRLQGRLGSTSRAPRWAIAWKYPPEEVNTKLVDIRVGVGRTGRVTPYAVV
EPVTVAGSEVEFATLHNQDVVKAKGVFIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFV
MPAECPECGTALQPAKEGDIDLRCPNARACPAQIRERLFYLAGRKCLDIENFGYVAATAL
SQPLEPAEPPLRDEGDLFGLSIEQLLPIKSYVLDPDSGLPKRDPKTGEEKVVTFFANQKG
EPKKNALAMLENIQAAKQRPLARILTGLSIRHVGPVAAEALAREFRSIDRIRDADETELA
AVDGVGATIAASLKQWFAVDWHQQIIESWRAAGVRMEEEQTGDEGPRPLEGVTVVVTGTL
QSHTRDGAKEALQNLGAKVTGSVSKKTGFVVVGDNPGSKYDKAMQLKVPVLDDDGFAVLL
EQGPDAARAVAVTPPEEE
NT seq
2217 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaacagcacgcagcgggatccgacgtgcccgcggcggcgcgggagcagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtattacgtgaaggacgccccg
gtcgtcagcgacgcggagttcgacaggctgctgcgctccctggaggccctggaggacgag
caccccgagctgcgcacccccgattcaccgacccagaaggtcgccggtgcgtacgccacg
gagttcaccgaggtcgagcaccgcgagcggatgctctcgctcgacaacgccttcgacgac
gaggagctggccggctgggccgagcggatcgccggtgagctgggcggcgatccccggagc
gccggctatcacttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctac
gaacacggccggctgacccgcgccgccacccgcggcgacggccgtacgggcgaggacatc
acccccaacgtccgcacgatcgcggagatcccgcaccgcctgaagggcgaccggatcccg
gacctggtcgaggtgcgcggggaggtctacttcccgatggagaagttcctggagctcaac
gagcggctggtcgccgacggcaagccgccgttcgccaacccccgtaacgccgcggccggt
tcgctgcgccagaaggaccccaagatcaccgccagccgcccgctgcacatggtcgtccat
ggcatcggtgcccgcgacggcctggtgatcgaccgccagtcgcaggcctacgacctgctc
aaggagtggggcctgccgacggccgcgcacaacaaggtcgtcgattccctggcggcggtc
cgcgagttcatcgcccattacggcgacgccgaaacccgccgtacggccgtcgagcacgag
atcgacggcgtggtcgtcaagctggacgagatccggctccaggggcgactgggctcgacc
tcgcgcgcgccgcgctgggcgatcgcctggaagtacccgccggaggaggtcaacaccaag
ctggtcgacatccgcgtcggcgtcggccgtacgggacgggtcacgccgtatgccgtggtg
gagccggtgacggtggccggctccgaggtggagttcgcgaccctgcacaaccaggacgtg
gtcaaggccaagggcgtgttcatcggcgacaccgtcgtgatccgcaaggccggggacgtc
attccggagatcctgggaccggtcgtcgatctgcgggacggcagcgagcgggagttcgtg
atgccggccgagtgccccgagtgcgggacggcgctgcagcccgccaaggagggcgatatc
gacctgcggtgccccaacgcccgtgcctgccccgcccagatccgtgagcggctgttctac
ctcgccggccgcaagtgcctggacatcgagaacttcggctatgtcgcggcgaccgcgctc
agccagccgctggagcccgcggagccgccgctgagggacgagggcgatcttttcggcctc
tccatcgagcagctgctgcccatcaagtcctatgtcctggaccccgattcgggcctgccc
aagcgcgatccgaagaccggcgaggaaaaggttgtcacctttttcgccaatcaaaagggc
gagccgaagaagaacgcgctggccatgctggagaacatccaggcggccaagcaacgcccg
ctggccaggatccttacggggctgtcgatccggcatgtgggcccggtggccgccgaggcg
ctggcgcgggagttccgctcgatcgaccgcatccgggacgcggacgagaccgaactcgcc
gccgtggacggcgtcggggccaccatcgccgcctcgctgaagcagtggttcgccgtggac
tggcaccagcagatcatcgagagctggcgggccgccggtgtccggatggaggaggagcaa
acgggtgacgagggcccgaggcctctcgaaggcgtcaccgtcgtcgtaacgggcacactt
cagtcacacaccagagatggcgcgaaagaggccctccagaacctcggagcgaaggtgacc
ggttccgtttcgaagaagaccggattcgtagtggtgggcgacaacccgggttcgaagtac
gacaaggccatgcagttgaaggtccccgtgctggacgatgatggcttcgcggtgctgctg
gaacagggtccggacgcagcacgagcggtagctgtcactccgcctgaggaggagtga
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integrated database retrieval system
