Streptomyces malaysiensis subsp. malaysiensis CGMCC0516: BV401_31195
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Entry
BV401_31195 CDS
T04980
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sauo
Streptomyces malaysiensis subsp. malaysiensis CGMCC0516
Pathway
sauo03030
DNA replication
sauo03410
Base excision repair
sauo03420
Nucleotide excision repair
sauo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sauo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BV401_31195
03410 Base excision repair
BV401_31195
03420 Nucleotide excision repair
BV401_31195
03430 Mismatch repair
BV401_31195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sauo03032
]
BV401_31195
03400 DNA repair and recombination proteins [BR:
sauo03400
]
BV401_31195
Enzymes [BR:
sauo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BV401_31195
DNA replication proteins [BR:
sauo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BV401_31195
DNA repair and recombination proteins [BR:
sauo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BV401_31195
NER (nucleotide excision repair)
GGR (global genome repair) factors
BV401_31195
MMR (mismatch excision repair)
DNA ligase
BV401_31195
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BV401_31195
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
PGRL1_N
DUF8259
Motif
Other DBs
NCBI-ProteinID:
AQA14211
LinkDB
All DBs
Position
7532734..7534956
Genome browser
AA seq
740 aa
AA seq
DB search
MAGEQQSKVPAEARERHARLAEQIEEHRFRYYVKDAPVISDAEFDKLMRELEAQEAEYPS
LRTPDSPTQKVAGAYETEFTEVEHRERMLSLDNAFDDEELAAWADRIAKELGSGSYHFLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAKIPNRLKGDRVPALVEVRG
EVFLPRERFEELNAGLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLDMVVHGIGAREG
FDIDRLSQAYELLHEWGLPTAAHFKVVDSIEGVREYIAYYGDNEHRHSVEHEIDGAVVKL
DEIPLQGRLGSTSRAPRWAIAWKFAPEEVNTKLVDIRVGVGRTGRVTPYAVVEPITVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPATCPEC
DTPLQPAKEGDVDLRCPNGRSCPAQLRERIFYLAGRKSLDIENLGYVAAAALTQPLEPAE
PPVKDEGDLFDLKIEQLLPIRSYVLDPDSGLPKRDPETGEEKVVTFFATQKGEPKKNALA
MLANIEAAKERPLARIITGLSIRHVGPVAATALAREFRSLDRIAEADEEELAAVEGVGPT
IAASLKEWFAVDWHREIVEKWRRAGVRLEEEGGEDEGPRPLEGLTVVVTGTLQSYTRDGA
KEALQSRGAKVTGSVSKKTDFVVVGDNPGSKYDKAMQVKVPVLDEDGFGVLLEQGPDAAR
EVAMTPPEEAAEDSPEESGE
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacagcagtcaaaggtccccgccgaggcgcgggagaggcatgccaggctc
gctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgcgccggtcatcagc
gacgccgagttcgacaagctgatgcgcgagctggaggcgcaggaggcggagtatccctcg
ctccgtacgcccgattcgccgacccagaaggtcgcgggggcgtacgaaacggagttcacc
gaggtcgagcaccgcgagcggatgctcagcctggacaacgcgttcgacgacgaggagctg
gccgcctgggcggaccgcatcgccaaggagctgggcagcggctcgtaccacttcctgtgc
gagctgaaggtggacggcctcgcggtcaacctcacctatgagcacgggcggttgacccgc
gccgcgacccgtggcgacggccgcaccggcgaggacatcacccccaatgtgcggacgatc
gccaagatccccaaccggctgaagggcgaccgtgtcccggcgctggtggaggtgcgcggc
gaggtattcctgccccgtgagcggttcgaggagctcaacgccgggctggtggaggcgggc
aagccgccgttcgccaacccgcggaacgcggcggcgggttcgctgcgccagaaggacccg
aaggtcaccgcgtcccggccgctggacatggtggtgcacggcatcggggcgcgcgagggc
ttcgacatcgaccggctgtcgcaggcgtatgagctgctgcacgagtgggggctgcccacc
gccgcccatttcaaggtggtggactcgatcgagggcgtgcgcgagtacatcgcgtactac
ggggacaacgagcaccggcactcggtggagcatgagatcgacggcgcggtcgtcaagctg
gacgagatcccgctccaggggcggctcggctccacctcgcgcgcgccgcgctgggcgatc
gcctggaagttcgcgcccgaggaggtcaacaccaagctggtggatatccgggtgggtgtg
gggcgcacggggcgggtgacgccttatgcggtggtcgagccgatcacggtcgcgggttcg
gaggtcgaattcgcgacgttgcacaaccaggatgtcgtcaaggccaaaggcgtgctgatc
ggtgacaccgtggtgctgcgtaaagcgggcgatgtcattccggaaatcctgggcccggtc
gtcgatctgcgggacggcagcgagcgggaattcgtgatgccggccacctgtccggagtgc
gatacgccgcttcagcccgccaaggagggcgatgtcgatctgcggtgccccaacggccgc
tcctgccccgcgcagctgcgcgagcggattttctatctcgcggggcggaaatccctggac
atcgagaacctcggctatgtcgccgcggccgccctcactcagccgctggaaccggccgaa
cctccggtgaaggacgagggcgatctcttcgacctgaagatcgaacaactgctgcccatt
cggtcgtatgtcctggacccggacagcggactgcccaagcgcgatccggagaccggtgag
gagaaggtcgtcaccttcttcgccacccagaagggcgagccgaagaagaacgccctggcg
atgctggccaatatcgaggcggccaaggagcgcccgctggcccggatcatcaccggcctt
tcgatccgtcatgtcggccccgtggccgccaccgcgctggcccgtgaattccgctcgctg
gaccggatcgccgaggccgacgaggaggagctggcggccgtggagggggtggggccgacc
atcgccgcctcgctcaaggagtggttcgcggtcgactggcaccgcgagatcgtcgagaaa
tggcggcgggccggggtccggctggaggaggagggcggcgaggacgaaggccctcgtccg
ctggagggcctcaccgtcgtggtcaccggaacactccagtcgtacacccgggatggggcc
aaggaggcgctacagagccgtggtgccaaagtcaccggatcggtttcgaaaaagactgat
ttcgtggtagtcggcgacaatccgggctcgaagtacgacaaggccatgcaagtgaaggtt
ccggtgctcgatgaggacggatttggcgtcctgctcgaacagggccccgacgcggccaga
gaggtcgcgatgacgcccccggaagaggccgcggaagactccccggaagagtccggggag
tag
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integrated database retrieval system
