Shewanella avicenniae: JYB87_00675
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Entry
JYB87_00675 CDS
T07845
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
savi
Shewanella avicenniae
Pathway
savi01501
beta-Lactam resistance
savi01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_00675
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB87_00675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
savi03036
]
JYB87_00675
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_00675
01504 Antimicrobial resistance genes [BR:
savi01504
]
JYB87_00675
Chromosome and associated proteins [BR:
savi03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
JYB87_00675
Transporters [BR:
savi02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
JYB87_00675
Antimicrobial resistance genes [BR:
savi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB87_00675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-barrel_RND
BSH_RND
HH_MFP_RND
RND-MFP_C
HH_EMRA
Beta-barrel_RND_2
YknX_C
HH_YBHG
HH_CzcB
HH_AAEA_pHBA
BSH_CzcB
TarH
HH_CyaD
CzcB_C
DUF2103
DUF5801
DUF5667
Tab2-like_C
Motif
Other DBs
NCBI-ProteinID:
QSX33803
UniProt:
A0ABX7QSY5
LinkDB
All DBs
Position
complement(156308..157447)
Genome browser
AA seq
379 aa
AA seq
DB search
MRHFVKVASGISMALWLSACGGEAPQAKGPQGPAGATEVGVIEVQSSSQALTTQLPGRSR
AYLEAEVRPQVSGIIIKQGFVEGTEVKPGQSLYQIDPATYQASVVSAEADLERAKASLAS
AKATYKRYTELTKTDFISKEDFDTAEAAYKEAQAAVSVAEAALNTAKINLEYTAVKAPIA
GQIGISTVTPGALVTANQANALATIQQLDPIKIDIVQSSAQMLRLKSSLKAGQLKASDDA
TVKLMLEDGSIYDQTGTLKFAEVSVDQSTGSVTLRAEFPNPDHTLLPGMYVRAIVNAGVD
PQAIMVPQKVVSHNAKGQAVVMVVNDQNVVEARVVTTAQVINHQWRITSGLKAGEKVVIE
GLQRIRPGAPVTTKVVSAE
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgcggcattttgtcaaagttgcctcaggtataagcatggcattgtggttgtccgcttgt
ggcggggaggccccgcaagccaaagggccacaaggtccagcaggcgctaccgaagttggt
gttattgaagttcaatcttcttctcaagcgctcaccacccaactgccgggtcgcagccgc
gcctaccttgaagcggaggttcgtcctcaagtatcaggcatcattatcaaacagggtttt
gttgaaggcactgaagtaaaaccaggccagtcactgtatcagattgaccctgccacctac
caagcaagcgtggtaagtgccgaagccgatttggaacgcgccaaagctagcttggcctca
gccaaagccacctataagcgttataccgagctgaccaaaactgacttcatcagtaaggaa
gatttcgacacggctgaagcggcgtataaagaagcccaagcagctgtcagcgtggcagaa
gcggcattaaacacagccaaaatcaatcttgaatataccgcagtaaaagcgccaatcgct
ggccaaatcggcatttcaacggtgaccccgggtgcattggtgacggctaaccaagcaaac
gccctagcgacaattcaacagcttgacccgatcaagattgatatcgtgcaatctagcgca
cagatgctgcgcctgaagtcgagcctgaaggctggtcaactaaaagccagtgatgacgcc
accgtgaagctgatgctggaagatggcagcatctacgatcaaaccggtacgctgaaattt
gctgaagtgagtgttgatcaaagcacaggttcagtaacactgcgcgctgaattcccgaac
ccagaccacaccctgctgccaggcatgtacgtgcgcgccattgttaatgccggcgtcgac
ccacaagcgattatggtgccgcaaaaggtggtatcacataacgccaaaggccaagccgta
gtgatggtggttaacgaccaaaacgtagtggaagcacgcgtggtgaccacagcgcaagtg
atcaatcaccaatggcgtattaccagcggcttgaaagctggtgaaaaagtggtgattgaa
gggctgcaacgtattcgccctggcgcaccagtgaccacaaaagtcgtatcagcagagtag
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