Shewanella avicenniae: JYB87_07695
Help
Entry
JYB87_07695 CDS
T07845
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
savi
Shewanella avicenniae
Pathway
savi03030
DNA replication
savi03410
Base excision repair
savi03420
Nucleotide excision repair
savi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
JYB87_07695 (ligA)
03410 Base excision repair
JYB87_07695 (ligA)
03420 Nucleotide excision repair
JYB87_07695 (ligA)
03430 Mismatch repair
JYB87_07695 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
savi03032
]
JYB87_07695 (ligA)
03400 DNA repair and recombination proteins [BR:
savi03400
]
JYB87_07695 (ligA)
Enzymes [BR:
savi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
JYB87_07695 (ligA)
DNA replication proteins [BR:
savi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
JYB87_07695 (ligA)
DNA repair and recombination proteins [BR:
savi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
JYB87_07695 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JYB87_07695 (ligA)
MMR (mismatch excision repair)
DNA ligase
JYB87_07695 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
JYB87_07695 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Thiamine_BP
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QSX35090
LinkDB
All DBs
Position
1741522..1743528
Genome browser
AA seq
668 aa
AA seq
DB search
MPTVEQQIDALIQTINEHNIRYYVDDNPTIPDAEYDRLMRQLKGLEAEHPALQRADSPSQ
RVGGAALAKFEQVEHLRPMLSLDNVFNEEEFTAFHRRLTERVGPVQYCCEPKLDGLAVSL
VYRDGVLVRAATRGDGAVGENITENVRTIRSIPLKLRGEGYPPLLEVRGEVFMPRAAFEA
LNERARARNEKLFVNPRNAAAGSLRQLDSKITASRSLAFYAYALGVIDPDSFAMADSHYG
QLQQLKTWGLPVSSETQLADDLAGVQHYYQTILQKRQNLAFDIDGVVFKVNEIEAQQQLG
FVARAPRWATAYKFPAQEELTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNA
DEIERLGVKIGDTVIVRRAGDVIPQIVAVVLDKRPTDAAEIVFPQECPVCSSLVERVEGE
AVARCSGGLFCAAQRKEAIKHFASRKAMDVDGLGDKIVEQLVDRELVKSPADLYRLTAST
LTTLERMGLKSATNLVVAIQASKTTTLAKFLYSLGIREVGEATAANLANHFKTLEALQQA
SLEQLIEVEDVGSVVAQHVKHFFEQSHNTEVIEQLIETGVSWPAIETPNEEAQPLKGQTW
VLTGTLTALGRTEAKAKLEALGAKVAGSVSKNTDCVVAGEAAGSKLAKATELGVKVIDEA
ELLAVLAS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgccaacagttgaacaacagattgatgctctaatccaaaccatcaacgaacataatatt
cgctactatgtcgatgataacccgacaattcctgatgccgaatatgaccgtttgatgcgg
caattgaaaggattggaagcagaacatccggcgttgcaacgagctgattcacccagccaa
cgtgtgggcggcgcagcacttgctaaatttgagcaggtagaacatctgcggccgatgcta
agtcttgataacgtgtttaacgaagaggagttcaccgcctttcatcgtcgtttgaccgag
cgagttggaccggtgcaatattgttgtgaacctaaacttgatggcttggctgtcagttta
gtttatcgagatggcgtattggtgcgcgccgcaacccgcggtgatggggctgtcggcgag
aacatcactgaaaacgtgcgtacgattcgctcaatcccattgaaattacgcggtgaaggt
tatccacctttacttgaagtgcgcggtgaagtgtttatgccgcgcgctgcatttgaagcg
ttaaatgagcgcgctagagcccgcaatgagaaactgtttgttaatcctcggaatgctgct
gcgggtagcttgcgtcagctagacagtaagatcactgcctcacgttcgctggcattttat
gcttatgccttaggtgtgattgatcctgacagctttgcaatggccgacagccattatggc
caattacagcaacttaaaacttgggggttgcctgtcagtagcgaaactcagctcgccgat
gatttggctggcgtacagcattattaccaaacaattttgcaaaaacggcagaatctcgcc
ttcgatatcgatggcgtggtctttaaagtcaatgagattgaagcgcagcagcagcttggt
tttgtagcgcgcgccccgcgttgggccactgcgtataagtttccggcacaagaggagttg
acgctgcttgaaggtgtcgattttcaagttggacgtaccggtgccgtgacccccgttgct
cggttaaaaccggtatttgtcggcggtgtgaccgtctctaatgccacgttgcataacgcc
gatgagatagagcgcttgggcgttaaaattggcgacactgtaattgtacgccgcgctggg
gatgtgatcccgcaaattgtggccgtagttttagataagcgcccgacggatgctgccgaa
atcgtattcccacaagaatgccccgtatgtagttccttggttgagcgggttgagggtgaa
gccgtggcgagatgcagcggtgggcttttctgtgccgcgcaacgtaaagaagccattaaa
cattttgcttcgcgtaaagcgatggacgttgatggcttaggcgacaaaattgttgaacag
ctggtggatcgcgaattggtgaaaagccctgcagacctttaccgtttgactgcatcgacg
ttaacgacgttagagcgtatggggctgaaatcagccaccaatttggttgtggcaattcaa
gcgtcaaaaacaactacgctggctaaatttctctattcactgggaattcgcgaagtaggt
gaagcaactgctgcgaacttagccaatcactttaaaaccttagaagcattgcaacaggcc
agtctggagcaattaatcgaagtcgaagatgtgggctctgtggttgcacaacatgtgaag
cacttctttgagcaaagccataataccgaagtcattgagcaattgattgagactggggtt
agctggccagctatcgaaacgccaaacgaagaggcacaaccgctcaaaggccaaacctgg
gtgttaaccggcactttaacggcattagggcgcacggaagcgaaggcgaaactggaagcc
ttgggcgccaaagtcgcggggagtgtctctaaaaataccgattgcgtggttgcgggcgaa
gccgctggttctaagttggcaaaagcaactgagcttggcgtcaaagtgattgatgaggct
gaattgctggcggtgttggcgtcataa
DBGET
integrated database retrieval system
