Shewanella avicenniae: JYB87_08370
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Entry
JYB87_08370 CDS
T07845
Name
(GenBank) efflux RND transporter periplasmic adaptor subunit
KO
K03585
membrane fusion protein, multidrug efflux system
Organism
savi
Shewanella avicenniae
Pathway
savi01501
beta-Lactam resistance
savi01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_08370
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB87_08370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
savi03036
]
JYB87_08370
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_08370
01504 Antimicrobial resistance genes [BR:
savi01504
]
JYB87_08370
Chromosome and associated proteins [BR:
savi03036
]
Prokaryotic type
Chromosome partitioning proteins
Divisome proteins
JYB87_08370
Transporters [BR:
savi02000
]
Other transporters
Accessory factors involved in transport [TC:
8
]
JYB87_08370
Antimicrobial resistance genes [BR:
savi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB87_08370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HlyD_D23
HlyD_3
Biotin_lipoyl
PYNP_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QSX35193
LinkDB
All DBs
Position
1880739..1881770
Genome browser
AA seq
343 aa
AA seq
DB search
MPTALTRQYLPAGLAAISLLFSTISLAAAPAKRVVVQPVTFEHEITRVDVVGTAEADKSV
VLYPAVAERVVEVNFKPGDKVVEGQALVKLYAQRQQVAVERAQIQLADAERTVKRLTNIR
QQGAVPQTDLDDAITLRDLAKVSLEEAQVALEERIVRAPFSGYVGLTDVEVGDRLSINTP
ITSIDSRAALYVNFQAPETAFNLLASNAEIVLRPWNNRAELLPATIAQLDSRVDATSRTI
RARALIDNRQDHYRPGMSFRVSLQIVGDEYARIPEAALSWGATGAYVWVVENQQAKRVDI
QIQQRLKGRILVAGELTSTTPLIIEGIQNLREGQTVTVVEEQF
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
atgcccaccgccttgactcgtcagtatttgcctgcaggattggctgctatctctttgctg
ttttccacaattagtttagctgccgcgcctgcgaaacgagtcgtcgttcaacccgtcacc
tttgaacatgaaatcactcgagtcgatgtggtcggcactgctgaagcagataaatcagtc
gtgctgtatccagcggttgcagaacgggtagttgaggtgaattttaagcccggtgataaa
gtggtagaaggacaagcgctggtaaaactctatgctcagcgccagcaagtggcggttgag
cgggcgcaaatccaattggccgatgctgaacgcaccgtaaaaagattgaccaatattcgc
cagcaaggtgcggtgcctcaaaccgatcttgatgatgccatcacgctgcgtgacttggcc
aaagtgtcgctcgaagaggcgcaagtggcgttggaagagcgtattgtgcgcgcgccattc
agtggctatgttggtttaactgatgttgaggtgggcgatcgcttgagcatcaatacgccc
atcaccagtattgatagccgtgccgccttgtatgtgaattttcaagccccagaaaccgcc
tttaacctattagcttcaaacgcggaaattgtgctccgcccttggaataaccgcgctgaa
ttattgcctgctactatcgcgcagctggactctcgggttgatgccaccagccgcaccatt
cgtgctcgagccctgattgataatcggcaagatcactatcgcccagggatgagctttcga
gtgagcttgcagattgtcggcgatgagtatgcccgtattcctgaagccgccttatcgtgg
ggagctaccggtgcctatgtgtgggtagtagaaaatcagcaggcaaagcgggttgatatt
cagatccagcaacgtctcaaaggccgaattttggtggcgggcgagttaaccagcaccacc
ccgctgattattgaaggcatccaaaacttgcgcgaggggcaaacggtgacggtcgttgag
gagcagttctaa
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