Shewanella avicenniae: JYB87_13930
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Entry
JYB87_13930 CDS
T07845
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
savi
Shewanella avicenniae
Pathway
savi01501
beta-Lactam resistance
savi01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
JYB87_13930
01503 Cationic antimicrobial peptide (CAMP) resistance
JYB87_13930
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
savi02000
]
JYB87_13930
01504 Antimicrobial resistance genes [BR:
savi01504
]
JYB87_13930
Transporters [BR:
savi02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
JYB87_13930
Antimicrobial resistance genes [BR:
savi01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
JYB87_13930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
QSX32834
LinkDB
All DBs
Position
3143452..3146577
Genome browser
AA seq
1041 aa
AA seq
DB search
MLLSDVSVKRPIVAIVLSLLLCVFGIVSFSKLSVREMPDVENPVVSIRTSYSGASAAIME
SQVTKNIEDQLTGISGIDQITSVSRNGSSRITVNFKIGWNIMEGVSDVRDAVSRAQRRLP
EEADDPIVYKDNGSGRPAIYIRLRSSELDRTQLTDYSRRVLEDKFNLISGVSSINISGGL
NQVMYVKLKPEAMAGRQITVSDIITALRNENLESPGGQIRNDATTMTVRTARLYLQPDDF
DYMQIRTADDGTPVYLKDVADVYIGAQNENSTYRSNGVSNVSLGIVAQSDANPLEVAKGV
RQQVDAMQKFLPKGTSLEIDYDSTVFIDQAIDEVYSTLYITGVLVILVLYVFIGQARATL
IPAVTVPVSLISAFMAAYFLGFSINLLTLMALILAIGLVVDDAIVVVENIFHHIERGEPP
LLAAYKGTREVGFAVIATTAVLVMVFLPISFMEGMVGLLFTEFSVLLAVSVVFSSIVALT
LTPVLASKLLKAHQQPSALNRLLDCIFSRLESHYRRGVAYCVKHKFAAPIVIVACIGGSY
LLMQQVPAQLAPAEDRGVVYAFVRGAEGTSYNRMSGNMDIIQQRLMPMLGKGVLKSFSLE
TPAFGGASGDQIGFVIMRLENWKERDVSAGEALGMISEALKDIPDVMIRPMLPGFRGRSS
EAVQFVIGGSDYQELYKWAQLLQAEANASGIITGVDLNYAETTPELMVRVDRQRAAELGV
SVADVSDTLEVMLGGRRQTTYVERGEEYDVYLRGDENHFNSMTDMSKIYVRTRSGQLVTL
DSVAHVREEASAQRLSHTDKKKSITLSANVTEGHTLGEALDYLDNLVAEKLPGDISISYS
GESKDYKENQNSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLWFTQ
QGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLAFEQAIIDASARRLRPILMTAFT
TLVGAVPLIFSSGAGAESRISVGTVVFFGMAFATLITLFVIPAMYRLLSYSTKSPGWVEQ
QLKDALANQAAANPDTSKVAD
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgtctgatgtttcggttaaacggccgatcgttgccatcgttttaagcttgctg
ttgtgtgtgtttggcatagtgtcgtttagtaaattgtcggtgcgcgaaatgcccgatgtt
gaaaaccctgtggtcagtattcgcacctcttacagcggtgcgtctgcggcgattatggaa
agccaagtcactaaaaatattgaagatcagcttaccggcatcagcggtatcgaccagatt
acttcggtgagccgtaacggctcgtcgcggattacggtgaactttaaaatcggctggaac
atcatggaaggggtaagcgatgtgcgtgacgcggtatcgcgcgcccaacgtcgcttgccg
gaagaagcagacgatccgattgtttacaaagataacggctctgggcgccccgccatttat
attcgcttgcgctcgagtgagctggatagaacccaactaaccgattactcgcgtcgagta
ctggaagataaattcaacctgatcagtggcgttagctcgatcaacatctctggcggctta
aaccaagtgatgtatgtcaagctcaagccagaagcgatggccggtcgccagatcaccgtc
agcgatattatcaccgcactgcgtaacgaaaacttggagtcgcccggcggccagatccgt
aacgacgccaccaccatgacagtgcgtacagcgcggctgtatctgcaacccgatgacttt
gattacatgcaaatccgcactgccgatgacggcacgccggtgtatctcaaagatgtcgcc
gatgtttacattggggctcagaacgagaactccacctatcgcagtaacggcgtgtcgaac
gtcagtctcggaattgtggcgcagtcagatgcaaaccctttggaagtcgccaaaggcgtg
cgccagcaagttgatgcaatgcagaagtttttgcccaaaggcaccagcctagaaatcgac
tatgactcgacggtatttatcgatcaggcaattgatgaagtgtactcaacgctctacatc
actggcgtgttggtgattttggtgttgtatgtatttatcggccaagcccgcgcaacgctg
atccccgcggtgacagtaccggtgtcgttaatttcagcctttatggcggcgtactttctt
gggttttcaatcaacttactgaccttgatggcgttaatcctcgccattggtttggtggtt
gatgacgccattgtggtggtcgagaacatcttccaccatatcgagcgcggcgagccgcca
ttgttggctgcctacaaaggcacccgtgaagtaggctttgcagttattgcaaccaccgca
gtgttggtgatggtgttcttacccatctcctttatggaaggcatggttggcttgctgttt
actgagttctcagtgttactggcagtttcggtggtgttttcctcgattgtcgcactgacg
ctcacgccagtgctcgccagcaaactgcttaaagcacatcagcaaccaagcgcgcttaat
cggttattggactgcatttttagtaggcttgagagccactatcgtcgcggtgttgcctat
tgtgtcaaacataaatttgctgcgccgattgtgattgtagcgtgtatcggcggcagctat
ctgttaatgcagcaagtgccagcacagttggcgccagcagaagatcgcggcgtagtgtat
gccttcgtgcgcggtgctgaaggcaccagttacaaccgaatgtcgggcaatatggatatt
attcaacagcgactgatgccgatgctgggcaaaggcgtgttgaagtcatttagccttgaa
acccccgcctttggcggtgccagcggcgaccaaatcggttttgtcatcatgcgcttggaa
aactggaaagagcgtgatgtttcggcgggtgaagccttggggatgatctctgaggcgctg
aaagatattcccgatgtgatgatccgcccgatgctgcccggttttcgcggtcgctccagc
gaggcggtacagtttgtgattggcggctccgattaccaagagttgtataagtgggcgcaa
ctactacaagcagaagccaatgccagcggcattatcacaggtgtcgacttgaactatgcc
gaaacaacacctgaactgatggtgcgcgtcgataggcagcgcgctgccgaacttggtgtc
agcgtcgcggatgtctctgacaccttagaagtgatgcttggcggtcgccgtcaaaccacc
tatgtcgagcgcggcgaagagtacgatgtctacctgcgtggtgatgagaaccacttcaac
agcatgaccgatatgagcaaaatctacgtgcgtactcgctctggtcaactggtgacgctt
gattcagtggcgcatgtacgcgaagaagcctcggcgcagcgcttatcccataccgataag
aaaaaatcgatcactctaagtgccaacgtgactgaaggccataccctcggtgaagccttg
gattatctcgataatctggtggcggaaaagctgccaggcgatatcagcatcagctattca
ggcgaatccaaagactataaagaaaatcaaaacagcatctttattgtgtttggcttggcg
ttgttagtggcgtacttagtgttagcggcgcaatttgagagctttatcaacccgctggtg
gtgatgtttaccgtccccatgggggtgtttggtggctttctcgggctgtggtttactcag
caagggatcaacatatacagccagatcggcatgattatgttgattggtatggtgaccaaa
aatggcattttgattgttgaatttgccaaccagttgcgtgatcgcggcttagcatttgag
caagccattattgatgcgtcggcccgacggttacgcccgattctgatgactgccttcaca
actctagtgggtgccgtaccgctgattttctctagtggtgctggtgcagaaagccgcatt
tcagtgggcacagtggtgttcttcggcatggcgtttgccaccttaatcaccctgttcgtt
atcccagcgatgtaccgtttactctcctacagcactaagtcgccaggctgggtagaacag
cagttgaaagatgcattagccaatcaagcagccgctaacccagacacaagcaaagttgcc
gactga
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