Shewanella avicenniae: JYB87_14940
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Entry
JYB87_14940 CDS
T07845
Symbol
rlmC
Name
(GenBank) 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC
KO
K03212
23S rRNA (uracil747-C5)-methyltransferase [EC:
2.1.1.189
]
Organism
savi
Shewanella avicenniae
Brite
KEGG Orthology (KO) [BR:
savi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
savi03009
]
JYB87_14940 (rlmC)
Enzymes [BR:
savi01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.189 23S rRNA (uracil747-C5)-methyltransferase
JYB87_14940 (rlmC)
Ribosome biogenesis [BR:
savi03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
JYB87_14940 (rlmC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Methyltransf_12
Cons_hypoth95
Methyltransf_11
TRM5-TYW2_MTfase
UPF0020
Motif
Other DBs
NCBI-ProteinID:
QSX33019
LinkDB
All DBs
Position
complement(3380417..3381568)
Genome browser
AA seq
383 aa
AA seq
DB search
MNNPSPCQFFQQGKCQSCQRIEMPLAEQLQHKQQQLQQLLTPFAISEWLAPVAGPELAFR
NKAKMVALGAAHQPILGIVSPSGEAVSLVHCPLYPASMQSLLARLEPFIQHAGIPPYRVD
KAKGELKFILLTQAHCSGEFMLRFVLRSEQAIPRIERELPALLAEFPKIKLVTANIQPVH
MARLEGEQEIWLHGEPRLREVFNDIPLYIRPKSFFQTNPEVAAQLYAAAKAWLAPLKLTR
LWDLFCGVGGFGLHCADKTTQLTGIEIEPEAIACARLSAEELGLEQVEFNALDSTSFADE
QSAGQVPDLVIVNPPRRGLGQALSIALNQFAPNYILYSSCNPQTLAADLGHLQGYATLRA
QLFDMFPHTDHYEVLVLLQRKSG
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaacccatccccgtgccaatttttccaacaaggcaaatgccaatcttgtcagcgc
attgagatgccgttagccgaacagctgcagcacaaacaacaacagctacaacaactgttg
actccgtttgcaatcagtgaatggcttgcgcccgttgctgggcctgagttagcgtttcgt
aacaaagcgaaaatggtggcgttgggcgcggcacatcagccgattttagggattgtcagc
cccagtggtgaagcggtaagtctagtccattgcccactttacccagcatcgatgcaatcc
ttgctggcacggttggaaccctttattcaacatgcgggaattccgccatatcgtgtcgac
aaagccaaaggcgaacttaagtttattctgttaacccaagcgcactgcagcggcgagttc
atgctgcgctttgtgttgcgttcagaacaggcaattcctcgcatcgagcgtgagttaccc
gcattgctggcggagtttcctaagatcaaattggtgacagccaatatccagcctgtgcat
atggcacgtttggaaggtgagcaggagatctggctgcatggcgagccgcgcctgcgcgaa
gtgtttaacgacattccgctctatattcgcccgaaaagcttttttcagaccaaccctgaa
gtggcggcacaactgtatgcggccgccaaagcatggttagccccgttgaagctaactcgc
ttatgggatctattttgcggggtaggaggctttggattgcactgcgccgataaaaccact
caactgaccggcattgaaattgagccagaagccatcgcatgtgccagactctctgccgaa
gagcttgggcttgaacaggttgagtttaacgccttagattcgaccagctttgcggatgaa
cagtctgctgggcaagtgccggatctggttattgtgaatccacctcggcggggcttaggc
caagcgttaagcattgctctcaaccagtttgcccccaactacattctgtattccagttgt
aatcctcaaactcttgcggcagatttgggccatttgcagggctatgcaacgctaagggcg
cagctgtttgatatgtttccgcacacagaccattacgaagttttagtactgctacaaaga
aaatctggttaa
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