Sulfobacillus acidophilus TPY: TPY_0983
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Entry
TPY_0983 CDS
T01576
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
say
Sulfobacillus acidophilus TPY
Pathway
say03030
DNA replication
say03410
Base excision repair
say03420
Nucleotide excision repair
say03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
say00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TPY_0983 (ligA)
03410 Base excision repair
TPY_0983 (ligA)
03420 Nucleotide excision repair
TPY_0983 (ligA)
03430 Mismatch repair
TPY_0983 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
say03032
]
TPY_0983 (ligA)
03400 DNA repair and recombination proteins [BR:
say03400
]
TPY_0983 (ligA)
Enzymes [BR:
say01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TPY_0983 (ligA)
DNA replication proteins [BR:
say03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TPY_0983 (ligA)
DNA repair and recombination proteins [BR:
say03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TPY_0983 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TPY_0983 (ligA)
MMR (mismatch excision repair)
DNA ligase
TPY_0983 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TPY_0983 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_8
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AEJ39173
LinkDB
All DBs
Position
921572..923602
Genome browser
AA seq
676 aa
AA seq
DB search
MTSEEAREHIRRLRETIRRHNRLYYEEDRPEITDAEYDQLVNELARLEAEFPEWQDPSSP
TQTVGGDVAPEFSTVVFTKPVLSLTNIHSLDEFDDFSRRLQEWVGGDALAFTAELKIDGL
SVILDYQKGQLVRAATRGNGEQGEDVTANVRQIAAIPQTLKVPITGQFRGEVYMPLPVFR
TLNQKREEDGLPRFANPRNAAAGSLRQLDPAITRSRRLSAWIYEIRELSEGPVIERQSEA
LTRLAEWGFPVEPHWTRCETRAEVEAFVAHWQAHRDELDFDIDGLVLKLDRIDWQERIGN
TQKAPRWAVAYKFPPEEALTVVKAIVLSVGRTGVLTPTAELEPVWLAGTRVSRASLHNED
IIRTLDVRVGDHVYVRKAGEIIPEVVRVERTLRPADTVPFRFPRHCPACGAEVVRLPDEA
AHRCTGGLTCPAQLRERLIHFASRGAMDIEGLGEKTVDLLLEHGRIRSVPDIYALTLDDL
LSLPRFQHTSAQKLLDAIAQSRQRPLSRLLFALGIRFVGEKAAQVLARHFGHLDRVVAAT
REELLAVPDVGERTAESILAFFREPHNQAVIHRLRELGVNFEEPIDQGAERPWTGQTFVL
TGTLSQLSRKAAEERIVALGGTVTGQVSQKTNWVVVGEKPGSKFVRAQQLGIPILTEQEF
LQWLANPDAEWAKRQR
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtctgaggaagcgcgtgagcacattcggcgcttacgtgaaaccattcggcgccat
aatcggctctattatgaggaagaccgaccggaaatcaccgacgcggaatatgatcagctg
gtgaacgaactcgcccgcctggaagcggaatttcccgagtggcaggatccctcgtcgccg
acgcaaacggtgggcggggatgtggctcccgaattcagtaccgtcgtctttaccaagccg
gttctcagtttgaccaacattcacagtctggacgaatttgacgatttttcccgtcggctt
caagaatgggtgggcggcgacgccttagcctttacggccgaattaaaaatcgacggattg
agtgtcattctcgactatcaaaagggtcagctggtacgggccgccacccgcggaaacgga
gagcaaggagaagacgtgacggccaatgtgcgtcaaatcgcggccattccccagaccttg
aaagtgccgattaccgggcagtttcggggcgaggtgtatatgcccttgcccgtgtttcgc
acgctgaaccaaaaacgggaagaggacggcctgccgcgatttgccaatccgcgcaatgcg
gcggcgggttctttacggcagttggatccggcgattacgcgctctcgccgactatccgcc
tggatttatgaaatccgcgagttgtcggaggggccggtgattgaacggcaaagcgaagcg
ctcacgcgacttgcggagtggggctttccggtcgaaccgcattggacccggtgtgaaacc
cgggcggaggtggaggcttttgtagcccattggcaagcccatcgggacgagctggatttt
gatattgacgggttggtgttgaaactcgaccggatagactggcaagaacgtatcggaaac
acccaaaaggccccccggtgggcggtggcgtacaagtttccgccggaagaggcgttaacc
gtggtcaaggcgattgtgttatcggtcgggcgcaccggggtgttgacgccgacggccgag
ctcgaaccggtgtggctggcggggacccgggtcagccgagcctcgttacacaacgaagat
attatccggaccctcgatgtacgcgtgggtgaccacgtctatgtccggaaagccggtgaa
attattcccgaagtggtgcgggtcgaacgaaccttgcgtcccgccgatacggttcccttt
cgctttccccgtcattgtcccgcctgcggggccgaagtggttcggttgccggatgaggcc
gcccatcgttgtaccggcggactgacctgccctgcgcaattacgcgagcgcctcattcat
tttgcctcccggggggccatggacattgagggtttgggggaaaagacggtcgatttgttg
cttgagcacggtcgtattcggtcggtgccggatatttatgccttgacgctcgacgacttg
ttaagtttgccgcgctttcagcacacgtcggcgcagaaactcctcgacgctatcgcccag
tctcgtcaacggcccctttcccgcttgctgttcgcattgggcattcggtttgtgggcgaa
aaggcggcgcaggttctggcacgccacttcgggcatttggatcgggtggtggcggccacc
cgcgaggagttgttggcggtgccggatgtcggtgaacggacggcggaaagtatcttggcc
tttttccgggaaccgcataaccaagcggtgattcatcgactccgggagctgggcgtgaac
tttgaggagccgatcgaccagggggcggaacggccctggacgggccaaacctttgtattg
accggcacattgagccaattgtcgcgaaaagccgccgaagaacggattgttgccttgggg
ggaacggtgaccggacaagtctcccaaaaaacaaattgggttgtcgtgggcgaaaagccc
ggttcgaaatttgtacgggcgcaacaactcggtatcccgatattgacggagcaggaattt
ttacaatggttggcgaatcctgacgcggaatgggccaaacgccaacggtaa
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