Shewanella amazonensis: Sama_1516
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Entry
Sama_1516 CDS
T00445
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
saz
Shewanella amazonensis
Pathway
saz03030
DNA replication
saz03410
Base excision repair
saz03420
Nucleotide excision repair
saz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
saz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sama_1516
03410 Base excision repair
Sama_1516
03420 Nucleotide excision repair
Sama_1516
03430 Mismatch repair
Sama_1516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
saz03032
]
Sama_1516
03400 DNA repair and recombination proteins [BR:
saz03400
]
Sama_1516
Enzymes [BR:
saz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sama_1516
DNA replication proteins [BR:
saz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sama_1516
DNA repair and recombination proteins [BR:
saz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sama_1516
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sama_1516
MMR (mismatch excision repair)
DNA ligase
Sama_1516
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sama_1516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DZR_2
5_3_exonuc
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABL99723
UniProt:
A1S5R7
LinkDB
All DBs
Position
1844244..1846289
Genome browser
AA seq
681 aa
AA seq
DB search
MSGPAHFQGTIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYP
QFAEPDSPTQRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLTDKVGSQVYCAE
PKLDGLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGE
VFMPRAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDD
NGADLVLAPTHKGQLERLTAFGLPVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVV
IKVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFV
GGVTVSNATLHNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVPERRPDEAQDILFPDNC
PVCGSLVERIEGEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKVVEQLIDKELV
ESPADLFKLNVSKLTMLERMGTKSATNLVAAIEEAKTTTLPKFLYALGIREVGEATAANL
AKHFRSLEAIRDADVDALIQVEDVGTVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIEK
PSADAQPLLGQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNTHCVVAGEAAGSKLA
KAQELGIPVLDEAGLIELIGL
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgagcggccccgcgcatttccaaggtaccatcatgcaagtcaaagccgaaattcaacgt
cttaccgctgaaatcaatcgtcacaacatcgcctactatgtgcaggatgcgccaagcatt
cccgatgcggaatacgaccggctgatgaaccagctcaaagcgctggaagccgagtaccca
cagtttgccgagcccgactcgcccacccagcgtgtgggcggcgcagcactgaataaattt
gaacaggtcagccacttgaaacccatgctgagcctggataatgcctttaatgaagaagac
ttcgtcgccttcgataagcgcctgaccgataaggtgggctcccaggtgtactgcgccgag
cctaaactcgacggcctcgcggtgagcctgatttaccgtaacggtgtgcttgagcgtgcc
gctacccgtggagatggcgccgtcggggaagatatcagcgtcaatatgcgcaccatcaag
tcggtaccactgagactgcagggcgatgatattccggcattggtggaggtgcggggagag
gtctttatgccaagggccgcctttgaagcgctgaatgaccgcgcccgtgcaaagggtgac
aagctcttcgtcaatccccgtaacgccgccgcgggcagcttgcgtcagctcgacagcaag
ataaccgccgagcgctcactggcattttatgcctatgcgctgggtgtggtgcaggacgac
aatggtgccgatttggtgctggcgcccacccacaaaggccaactcgagcgccttacagcc
ttcggtttgccggtgagcaaggaagtgaagctctgtgaaggccttgcagaggtgatggcc
tactatgcggatatccttaaacgccgtgacgagcttgcctttgaaatcgatggcgtggtg
attaaggtgaacgacatcgaagcccagcagcagctcgggtttgtggcccgtgcgccgcgc
tgggctatcgcctttaagtttcctgcacaggaagagatgactgtgctcgaaggcgttgat
tttcaggtgggtcgtaccggcgccgtgacccctgtagcccgcttaaaacctgtgtttgtg
ggcggtgtgaccgtatccaatgcgactttgcacaacggtgatgaaattgcccgccttggg
gtgaagattggcgataccgtgattattcgccgcgccggtgatgtgatcccgcaaattgtg
gctgtggtgcctgagcgccgtcctgatgaggcgcaggatatcctgttcccggacaattgc
cctgtctgcggctcgctggtggagcgcattgaaggcgaggcggtggcccgctgcagcggc
gggcttttctgtgaagcccagcgccgggaggccatcaagcactttgcatcccgaaaggcc
atgtatatcgatggcatgggcgacaaggtggttgagcagcttattgataaagagctggtg
gaaagcccggcggatctctttaagctcaatgtgtcaaagctgaccatgcttgagcgcatg
ggcaccaagtcggccaccaatctggtggcggccattgaagaagccaaaaccaccacctta
cccaagttcctctatgcactgggtattcgggaagtaggggaggccacggccgccaacctg
gcgaagcactttcgaagcctcgaagccatcagggacgccgatgtggacgccctgatacag
gtagaagatgtgggtacagtggttgctcagcacgtggcgcacttttttgcccagccccat
aaccttgaggtgatagatgcgctgatcgcggccggggtaaactggcctgccatcgaaaag
ccatccgccgatgcacagccgctgctgggccaaacctgggtgctcacggggacgctcacc
agtcttggccgcaccgaggccaaggccaagcttgaggcccttggtgccaaggtggctggc
agtgtgtccaagaatacccactgcgtagttgccggtgaagcggcgggctccaagcttgcc
aaggcccaggagttgggtatcccggtattggatgaagctggtctgattgagctgataggc
ctctga
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