Salinimicrobium sp. 3283s: VS868_16365
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Entry
VS868_16365 CDS
T10578
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sazs Salinimicrobium sp. 3283s
Pathway
sazs03030
DNA replication
sazs03410
Base excision repair
sazs03420
Nucleotide excision repair
sazs03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sazs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
VS868_16365 (ligA)
03410 Base excision repair
VS868_16365 (ligA)
03420 Nucleotide excision repair
VS868_16365 (ligA)
03430 Mismatch repair
VS868_16365 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sazs03032
]
VS868_16365 (ligA)
03400 DNA repair and recombination proteins [BR:
sazs03400
]
VS868_16365 (ligA)
Enzymes [BR:
sazs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
VS868_16365 (ligA)
DNA replication proteins [BR:
sazs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
VS868_16365 (ligA)
DNA repair and recombination proteins [BR:
sazs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
VS868_16365 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
VS868_16365 (ligA)
MMR (mismatch excision repair)
DNA ligase
VS868_16365 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
VS868_16365 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
NagJ_C
DUF676
Zn_Ribbon_TF
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WZL89156
LinkDB
All DBs
Position
complement(3694842..3696833)
Genome browser
AA seq
663 aa
AA seq
DB search
MKPEEKIKKLREELHRHNHLYYVLDKPEISDYDFDQKLKELQELEEKHPEFYDENSPTLR
VGGAVTKNFATVVHEHRMYSLDNSYSKEDLENWEKRIEKQVDGEVNFTCELKYDGASISL
TYEKGEFKQAVTRGDGIQGDDVTNNVRTIRSVPLRLKGDFPEKFEIRGEIVLPYEGFAQL
NAARVEAGEEPYANPRNTASGSLKLQDSAEVARRPLDCLLFSLTGNLPGIKSQYEGLEKA
REWGFKIPAEAKLAKSLKEVMEFVNYWDVHRHDLPYETDGVVVKVNSLHQQEELGYTAKS
PRWAMAYKFKAEQVSTKLNKISYQVGRTGAITPVANLEPVQLGGTTVKRASLHNADQIEK
LDVREGDEVYVEKGGEIIPKIVGVDFTKRDPDSNPTQYITNCPECDTELVRNEGEAQHYC
PNFNGCPPQIIGRIQHYISRKAMDIEGLGGETVALLVNEGLIGNYADLYELKKEQILPLE
RMAEKSAENLINGIENSKQIPFERVLFALGIRYVGETVAKKLAKEFKNIDALKNANQQEL
ENVDEIGERIAESVVEFFADEENLKNVERLKGYGLQLEISAEKLAGQTNKLEGQTFVVSG
VFEMSRNDLKKLIEDNGGKVSGSISSKTSYVVAGENMGPSKLAKAESLQIPIIDEKKFLK
MIE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgaagaaaaaataaaaaagctgcgggaagaacttcaccgccacaaccacctg
tattacgtactcgataagccggaaatatccgactatgactttgatcaaaaactaaaggag
ctacaggagcttgaagagaaacatcccgaattttatgacgagaactccccaactttaagg
gttggtggggctgtcactaagaattttgccaccgtggtgcatgagcacaggatgtattca
cttgataattcttattctaaggaagacttggaaaactgggagaaaagaatagaaaaacag
gttgatggagaggtgaatttcacctgtgaattgaagtatgacggggcatcaattagtctt
acctatgaaaaaggggaatttaagcaggccgttacccgcggcgacgggattcagggcgat
gatgtaacaaataatgtacgaaccataaggtctgttcctctaagactgaaaggtgatttt
cccgaaaaatttgagattaggggcgaaattgtgcttccgtacgaaggtttcgcccagctt
aatgctgcgcgagtggaggccggagaagagccttatgcgaatccgcgaaatacagcttcg
ggaagcctgaagttgcaggacagtgccgaagtggcccggcggcctttagattgtcttttg
ttcagcttaaccggaaaccttccggggatcaagtcgcagtatgaagggttggaaaaagcg
agagaatggggctttaaaattcctgcggaagctaaactggccaaaagcctgaaagaggtg
atggagtttgtgaattactgggatgtgcaccggcacgatttgccttatgagaccgatggg
gtagtggtgaaagttaacagcctgcaccagcaggaagagctggggtacactgctaaatct
ccacgttgggccatggcttataaattcaaggccgagcaggtttccactaagttgaacaag
atcagttaccaggtgggccgcacaggagccataactccggtggcaaacctggaacccgta
caacttggaggtacaacggtgaaaagagcatcccttcataatgccgatcaaattgagaaa
ctcgatgttagggaaggcgatgaggtttatgtggaaaaaggaggagagatcattccgaag
atcgttggagtagattttactaaaagagatccggattcaaatcccactcaatatatcacc
aattgcccggaatgtgatactgagttggtgagaaatgaaggagaggcgcagcattattgt
cctaactttaatggttgtccgccacagatcattggaagaatccagcattatatttccagg
aaagcgatggatattgaaggtctgggaggggaaacagtggcacttctggtcaatgaaggc
ctcataggaaactacgccgatctctatgagttgaagaaagaacagatcctgccgctggag
cgtatggctgaaaaatcggctgaaaatttgatcaatgggatagagaactcaaagcagatc
ccatttgaacgggtacttttcgccctgggaatccgctatgtgggggaaactgtagccaaa
aagctggcgaaggagtttaaaaacattgatgctttgaaaaatgcaaatcagcaggaatta
gaaaatgttgatgagataggggagcgaattgccgagagtgtggtggagttctttgcagat
gaagagaacctgaaaaacgtggaacgactgaaaggttacggcttgcaattagagatttct
gccgagaaacttgccggacaaacgaacaaactggaaggccagacctttgtggtttctgga
gtatttgaaatgtcgcgcaatgacctcaagaagctcattgaagacaatggtggaaaagtt
tcaggctctatttcttcaaaaacaagttatgtggtagcaggcgaaaatatgggccccagc
aaacttgcaaaagctgaaagtctccagatcccaatcattgatgagaaaaaatttctcaaa
atgattgaataa
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