Sulfurospirillum barnesii: Sulba_1433
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Entry
Sulba_1433 CDS
T02139
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sba
Sulfurospirillum barnesii
Pathway
sba03030
DNA replication
sba03410
Base excision repair
sba03420
Nucleotide excision repair
sba03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sulba_1433
03410 Base excision repair
Sulba_1433
03420 Nucleotide excision repair
Sulba_1433
03430 Mismatch repair
Sulba_1433
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sba03032
]
Sulba_1433
03400 DNA repair and recombination proteins [BR:
sba03400
]
Sulba_1433
Enzymes [BR:
sba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sulba_1433
DNA replication proteins [BR:
sba03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sulba_1433
DNA repair and recombination proteins [BR:
sba03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sulba_1433
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sulba_1433
MMR (mismatch excision repair)
DNA ligase
Sulba_1433
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sulba_1433
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
RapA_C
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFL68721
UniProt:
I3XXP7
LinkDB
All DBs
Position
complement(1403242..1405188)
Genome browser
AA seq
648 aa
AA seq
DB search
MNHQEYIEKLEILKVWAKAYYVDDAPIASDEEYDRLYHEVLKYEQENPLFADESSPTKRV
GGVVLEGFEKASHKARMWSMEDVFDEHDLDAWIERVKKVKERFTFYCEPKFDGASLNLIY
ENGMLKQAITRGDGSIGEDVTQNVKTIGSIPLKIAYEGEIEIRGEVVIKKADFERLNDER
LKNNESLFANPRNAAAGSLRQLDTSVTAKRKLMFYPWGIGVNSLTQSFLSQKMSFVYSLG
FLQPPRIVVTQNVQDVHTLYHELIANRDAIEMMMDGMVVKVDDISLQEELGYTVKYPKWM
VAFKFPAIEKVTKLKDITLQVGRTGVVTPVAEVEAVNIEGVVVERATLHNFDEIERKDIR
IGDSVIIIRSGDVIPKIIKVLVERRNGTEVTPQRPLSCPVCGSELLDEGALIKCQNLSCD
ARVVGAMIHFASKKALNIDGLGDKIIEQLYAQNVVLHVKDLYALKREQLLALEGFKAKKA
DNLLEAIEQSKKVSLEKFINALGIEHIGEVAAKKIARAFGLEWLEAGYEAIIALEGFGEE
MAKSLVEFIRVNRDETYELMAVIEPVASKLEITESVFTGKTVVLTGSMSKPRDEIKGMLE
QLGAKVSGSVSKKTDFVIFGEEAGSKLDKAIELGVKTLSESELNGMIE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatcaagagtatattgaaaaactagagattttgaaagtatgggcaaaagcctat
tatgtcgatgatgcgcccattgccagcgatgaagagtatgataggctctatcatgaagtc
ttaaagtatgagcaggaaaatccactctttgcggatgagagtagtcccacaaaacgtgtg
ggcggtgtggtcttggaagggtttgagaaagcctcgcataaggcacgtatgtggagcatg
gaagatgtctttgatgagcacgatttggatgcgtggatagagcgtgttaaaaaagtcaaa
gagcgttttactttctactgtgaaccaaaatttgatggggcaagtttgaacctcatttat
gaaaatggaatgctcaaacaagccatcacccgaggcgatggaagtattggtgaggatgtc
acgcaaaatgttaaaaccattggctctattcctttaaagattgcttatgaaggtgagatt
gaaattcgaggtgaggtggttattaaaaaagcggactttgagcgccttaatgacgagcgt
ttaaaaaacaatgagtccctctttgccaatcctagaaatgctgctgcaggaagccttagg
cagttagatacgagtgtgacagccaaacgtaagcttatgttttatccgtggggcattggg
gtcaatagcttaacacagagctttttaagccaaaaaatgagctttgtctacagccttggt
tttttacaaccacctcgtattgttgtcacgcaaaatgtgcaagacgttcatacgctttac
catgagctgattgccaaccgtgatgctatcgagatgatgatggatggaatggtggttaaa
gttgatgatataagcttgcaagaagagttaggctataccgtgaagtatcctaaatggatg
gtagcgttcaaatttcctgcgattgaaaaagtgacaaagcttaaagacatcacgcttcaa
gtcgggcgtacaggtgtagttacacctgtggcagaagtggaggctgtgaatatcgagggt
gtggtggtggagcgagcgacactgcacaattttgatgagatagagcgcaaagatattcgc
ataggagacagtgtcattatcattcgcagtggcgatgttattcctaagattattaaagtc
ttagtggagcgcagaaatggcacggaagtaacaccacaacgtccgttaagctgtcctgtg
tgtgggagtgagcttttggatgagggtgcgctcattaagtgccaaaatctctcgtgtgat
gcgagggttgtgggggcgatgattcactttgcatctaaaaaagcgcttaatattgatggg
cttggcgataaaatcattgagcaactctatgcgcaaaacgtggttttacatgtaaaggat
ttatacgcactcaagcgtgaacaattgctggcattagagggttttaaagcgaaaaaagcg
gacaatctgttagaagccattgagcagagtaagaaagtcagtttagaaaaattcatcaac
gctttgggcattgagcatattggcgaagtggcggctaagaagatagcacgtgcgtttggg
ttggagtggttagaagcgggttatgaagcgattattgccttagagggttttggtgaggag
atggcaaagagtttggtggagtttattcgtgtgaatcgtgatgaaacctatgaactcatg
gcggtgattgaacctgttgcttcaaagttagagataaccgagtctgtttttacaggaaaa
accgtggtgctgactggttctatgagcaaaccacgtgatgagataaaaggaatgcttgag
caattaggcgcaaaagtgagcggaagtgtctcgaaaaagaccgattttgtgattttcggt
gaagaagcaggtagcaaactggacaaggccatagagcttggtgtcaaaacactcagtgag
agtgaactaaatgggatgatagaatga
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