Abyssicoccus albus: BVH56_02025
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Entry
BVH56_02025 CDS
T04690
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbac
Abyssicoccus albus
Pathway
sbac03030
DNA replication
sbac03410
Base excision repair
sbac03420
Nucleotide excision repair
sbac03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbac00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BVH56_02025 (ligA)
03410 Base excision repair
BVH56_02025 (ligA)
03420 Nucleotide excision repair
BVH56_02025 (ligA)
03430 Mismatch repair
BVH56_02025 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbac03032
]
BVH56_02025 (ligA)
03400 DNA repair and recombination proteins [BR:
sbac03400
]
BVH56_02025 (ligA)
Enzymes [BR:
sbac01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BVH56_02025 (ligA)
DNA replication proteins [BR:
sbac03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BVH56_02025 (ligA)
DNA repair and recombination proteins [BR:
sbac03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BVH56_02025 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BVH56_02025 (ligA)
MMR (mismatch excision repair)
DNA ligase
BVH56_02025 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BVH56_02025 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AQL55804
LinkDB
All DBs
Position
367039..369021
Genome browser
AA seq
660 aa
AA seq
DB search
MTVEARIKSLQKKLNQYNYEYHVLDQPTIEDSEYDALLRELIELEQQHPEFKTDDSPTVR
VGGVVLDKFEKVKHDTPMLSLGNAFNEEDLRAFDHRITQAVGSVQYMCELKIDGLAVSLK
YEDGKFIQGLTRGDGTTGENITENLKTIHNIPLSIEEPLSFEVRGEAFMSKDVFKSLNES
RESDGLDTFKNPRNSAAGSLRQLDSRLASKRKLDIFLYSVNDLTEINASTQHEALSRLDT
LKFKTNQERSLKDNIEGVLDYIKYWTEHRHDLRYEIDGIVIKVNDLEKQQQLGFTEKSPR
WAIAYKFPAEEVETYLHDVELSIGRTGVVTPTAILEPVEVQGTVVSRASLHNEDLIHDKD
IRVGDYVIIKKAGDIIPEVVRPILEKRDDTLQKYKMPTHCPVCDHELIRVAGDVALRCIN
PKCPAQLKEGLKHFVSRTAMNIDGLGDKIIDQFYDESLISDVADLYYLNKEDLIQLERMG
DKKATNILNAIEESKHNSLEKLLHGLGIRHLGGKASHSVAKHFKNIDMLMEATEEEIINI
DDIGEITAQSIVQYLDNEDIHHLIEKFKAKGVNMDYLNDESLVSSKLEGQTFVLTGKLEQ
LTRDEAKEQLTQLGAKVTGSVSRNTDVLVAGVDAGSKLDKAKSLGITIWDEAQLLNELQE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgactgtagaagcacgaatcaaatcattacaaaaaaaattaaaccaatacaattatgaa
tatcatgtacttgaccaaccgacgattgaagatagtgaatacgatgcactgcttcgtgaa
ttaatcgaattagaacaacaacatccggaattcaaaaccgacgattcaccgaccgttaga
gttggaggagtagtgttagataagttcgaaaaagttaaacatgatacaccaatgttaagt
ttaggtaatgcatttaatgaagaagatctacgtgcattcgaccatcggattacacaagct
gtgggctcagttcaatatatgtgtgaattgaagattgatgggctcgcagtatcactaaag
tatgaagatggtaagttcattcagggattaacacgtggcgatggtacaacaggtgagaat
attacagagaacttaaaaacaatccacaatataccgttatctattgaagaaccattgtca
tttgaagtccgtggagaagcttttatgagtaaggatgtctttaaatcattaaatgaatca
cgtgaaagtgatggattagatacattcaagaaccctagaaatagtgcggctggaagctta
agacaattagattcaaggcttgcgagtaaacgaaagttagatattttcttatatagcgtc
aatgatttaacagagattaatgcatcaactcaacacgaagccctgtcacgtttagataca
ttgaagttcaaaacaaaccaagaaagatcgctaaaagataatatagaaggtgtattggat
tatataaagtattggactgaacatcgtcatgatttacgatacgaaattgatggtattgtc
atcaaagtaaatgacttagagaaacaacaacaactggggtttacagagaaatcaccacgt
tgggcgattgcgtataaatttccagctgaagaagttgaaacctatttacatgatgtagaa
ctatcaattggtaggacgggggtcgtcacaccaacggcaattttagaacccgttgaagta
caaggcactgtagtgagtagagcttcccttcataatgaagatttaatccatgacaaagac
attcgcgtaggtgattatgtcatcatcaagaaagctggtgatattattcctgaagttgtt
agacctatattagaaaagcgtgacgatactcttcaaaaatataagatgccgacgcattgt
ccagtctgtgatcacgaactcattagggtagctggtgatgttgcattaagatgtattaat
ccgaagtgtcctgctcaattaaaagaaggtttgaaacacttcgtttcacgaacagcgatg
aatattgacggtttaggagataaaattatcgatcagttttatgatgaatctcttatatca
gatgtcgctgatctatactatttaaataaagaggatttaattcagctcgaacgaatgggc
gacaaaaaagcaacaaatatattgaatgctattgaagaaagcaaacataattcgttagaa
aagctactccatggacttggtattagacaccttggcggtaaagcaagtcatagtgttgca
aagcatttcaagaatatagatatgctcatggaagctactgaggaggaaattataaatatt
gatgacataggtgaaattactgcacaatctatagtacaatatttagataatgaagatatt
catcatttaatcgaaaagttcaaagctaaaggcgtcaatatggactatttaaatgatgaa
agtctagtatcaagtaaactagaaggacaaactttcgtactgacaggcaaacttgaacaa
ttaacaagagatgaggcgaaagaacaactgacacaattaggagcgaaagttacaggttct
gtaagtcggaatacagatgtgttagtcgctggcgttgatgccggtagtaaactcgataaa
gcgaaatcgctaggtattacgatatgggatgaagcgcaactattgaatgaattacaagaa
tag
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