Capillimicrobium parvum: DSM104329_04633
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Entry
DSM104329_04633 CDS
T08390
Symbol
ligA_2
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbae
Capillimicrobium parvum
Pathway
sbae03030
DNA replication
sbae03410
Base excision repair
sbae03420
Nucleotide excision repair
sbae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DSM104329_04633 (ligA_2)
03410 Base excision repair
DSM104329_04633 (ligA_2)
03420 Nucleotide excision repair
DSM104329_04633 (ligA_2)
03430 Mismatch repair
DSM104329_04633 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbae03032
]
DSM104329_04633 (ligA_2)
03400 DNA repair and recombination proteins [BR:
sbae03400
]
DSM104329_04633 (ligA_2)
Enzymes [BR:
sbae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DSM104329_04633 (ligA_2)
DNA replication proteins [BR:
sbae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DSM104329_04633 (ligA_2)
DNA repair and recombination proteins [BR:
sbae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DSM104329_04633 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
DSM104329_04633 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
DSM104329_04633 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSM104329_04633 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UGS38209
UniProt:
A0A9E6Y194
LinkDB
All DBs
Position
complement(4760932..4762962)
Genome browser
AA seq
676 aa
AA seq
DB search
MSRRGDRAARAAELRAELQDHAERYYVHDDPVIGDDEYDALYGELKALEEADPSLVTADS
PTQRVGGLAPVSRLEKVTHAQPMLSLANARSEEELRDWVQRMRNHLAREGIEDPVFRFVC
EPKIDGLAISLLYRDGGLERGATRGDGTVGEDVTHNLRTIAAIPARLEDAPPLLEVRGEV
YMALTDFQALNERRAEAGESTFMNPRNAAAGTIRQLDPNLAAQRPLSMWAYGVGVTEGVS
FARHSDALAWLRERGFPVNEDIVVRDGEDEVVAQCLGWQERRGSLDFEIDGVVVKVDDAE
LQRRLGVVGRDPRWAIAWKFPPTTKVTRLLRVDWNVGKFGDLHPFAVLEPVPVGGVTVKL
ATLHNEEDLARKDLRVGDEVIVLRAGDVIPQVVSPAPHVAERTDRGPLPRPPERCPDCGT
RTVKPEGAVFTKCPNRKGCPGQQWQLTKHFVSRGAMDVEGLGELQVQRLLDAGVISSVAD
LYDLTAERIAQLEGYGEVSARNLVAAIERSKEVPFGRVLFALGLEEVGFVTGRNLAQRFR
SIDALLEATPDQIAQTPGIGEKMAATIYEQLQDDDMRALIAALRARGVRFEEEGPPPGDG
PLSGRTFVLTGTLPELTREEATARIVAAGGRVTSSVSKKTDYVVAGDSPGSKLAKAERLG
VDVVDENGLLALLGGV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgagccggcgcggcgatcgcgccgcccgcgcggcggagctgcgcgccgagttgcaggac
cacgccgagcgctactacgtccacgacgacccggtcatcggcgacgacgagtacgacgcg
ctctacggcgagctcaaggccctcgaggaggccgacccgtcgctcgtcacggcggactcg
ccgacgcagcgggtcggcggcctcgcgccggtcagccgcctcgagaaggtcacccacgcg
cagccgatgctctcgctggccaacgcgcgcagcgaggaggagctgcgcgactgggtgcag
cggatgcgcaaccacctcgcgcgcgagggcatcgaggacccggtcttccggttcgtctgc
gagccgaagatcgacgggctcgcgatctcgctgctctaccgcgacggcgggctcgagcgc
ggcgcgacccgcggtgacgggacggtcggcgaggacgtcacgcacaacctgcgcacgatc
gccgcgatcccggctcgcctcgaggacgcgccgccgctgctcgaggtgcgtggcgaggtc
tacatggcgctcaccgacttccaggccctcaacgagcgccgcgccgaggcgggcgagtcg
acgttcatgaacccgcgcaacgccgcggcggggacgatccgccagctcgacccgaacctc
gccgcccagcgcccgctgtcgatgtgggcctacggggtcggcgtcaccgagggcgtgtcg
ttcgcgcgccactccgacgcgcttgcctggctgcgcgagcgcggcttccccgtcaacgag
gacatcgtcgtacgcgacggcgaggacgaggtggtcgcgcagtgcctcgggtggcaggag
cggcggggctcgctggacttcgagatcgacggcgtcgtcgtcaaggtcgacgacgccgag
ctgcagcgccggctcggggtggtcgggcgcgacccgcgctgggcgatcgcctggaagttc
ccgccgaccacgaaggtgaccaggctgctgcgcgtcgactggaacgtcggcaagttcggc
gacctgcacccgttcgccgtcctcgagccggtgccggtcggcggcgtgaccgtcaagctc
gccacgctgcacaacgaggaggacctcgcccgcaaggacctgcgcgtgggcgacgaggtc
atcgtcctgcgcgccggcgacgtgatcccccaggtcgtctcgccggcgccccacgtggcc
gagcgcaccgatcgcgggccgctcccgcgcccgcccgagcgctgcccggactgcggcacc
cgcacggtcaagcccgagggcgcggtcttcacgaagtgcccgaaccgcaagggctgcccg
gggcagcagtggcagctgaccaagcacttcgtctcgcgcggggcgatggacgtcgagggc
ctcggcgagctgcaggtgcagcggttgctcgacgcgggcgtgatctcgagcgtcgccgac
ctctacgacctgaccgccgagcggatcgcgcagctcgagggctacggcgaggtgtcggcc
cgcaacctcgtcgccgcgatcgagcgctccaaggaggtgccgttcgggcgcgtgctgttc
gcgctcggcctcgaggaggtcggcttcgtcaccgggcgcaacctcgcccagcggttccgc
tcgatcgacgcgctgctggaggcgaccccggaccagatcgcgcagacgccgggcatcggc
gagaagatggcggcgacgatctacgagcagctgcaggacgacgacatgcgggccctgatc
gcggccctgcgggcgcggggggtgcgcttcgaggaggagggcccgccgcccggcgacggg
ccgctgtccggacggacgttcgtgctgaccggcacgctgcccgagctgacgcgggaggag
gcgaccgcgcggatcgtcgccgccggcggccgcgtgacctcctcggtgtcgaagaagacc
gactacgttgtggccggcgactcgcccggctcgaagctcgcgaaggccgagcggctcggc
gtcgacgtcgtcgacgagaacgggctgctcgcgctgctcggcggcgtgtga
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