Salinicoccus bachuensis: RQP18_09200
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Entry
RQP18_09200 CDS
T10955
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbah Salinicoccus bachuensis
Pathway
sbah03030
DNA replication
sbah03410
Base excision repair
sbah03420
Nucleotide excision repair
sbah03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbah00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RQP18_09200 (ligA)
03410 Base excision repair
RQP18_09200 (ligA)
03420 Nucleotide excision repair
RQP18_09200 (ligA)
03430 Mismatch repair
RQP18_09200 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbah03032
]
RQP18_09200 (ligA)
03400 DNA repair and recombination proteins [BR:
sbah03400
]
RQP18_09200 (ligA)
Enzymes [BR:
sbah01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RQP18_09200 (ligA)
DNA replication proteins [BR:
sbah03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RQP18_09200 (ligA)
DNA repair and recombination proteins [BR:
sbah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RQP18_09200 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RQP18_09200 (ligA)
MMR (mismatch excision repair)
DNA ligase
RQP18_09200 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RQP18_09200 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
RUBY_RBDX
DUF6933
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WZX28829
LinkDB
All DBs
Position
complement(1802616..1804586)
Genome browser
AA seq
656 aa
AA seq
DB search
MEEKIKALQDKLNRYNYEYHVLDDPTIPDSEYDRMLHELIALEEQYPEFKTDTSPTVRVG
GAVLSRFEKVAHDTPMLSLGNAFNEGDLRAFDKRVREAVEDVEYMCELKIDGLAVSLKYE
SGRFVQGTTRGDGTVGENITSNLRTIRAIPLTLDRPLSFEVRGEAYMPKSSFEKLNAEKE
KNGETPFQNPRNAAAGSLRQLDPKLAAKRNLSVFLYSVNDLTELEADTQSAALDELDAAG
FKTNRERKLVSDIDDVLEYIEYWENHRNDLEYDIDGIVIKVNAFSSQEQMGYTAKSPRWA
IAYKFPAEEVVTDLVDIELTVGRTGAITPTAILKPVKVAGTTVARASLHNHELIEEKDIR
INDKVIIRKAGDIIPEVVRPILEERTDQEIYEAPTKCPGCGHDTVKLEDEVAIRCINPGC
PAQLVEGMIHFVSRSAMNIDGLGEKVVRQLFEAGLIKDVGDIYALTYEDLIPLERMGDKK
IENLLGAIKDSKDNPLRKLLVGLGIRFLGTKASELIAQEFGSMEEIMKQPKERFIEIPEI
GEKIADSIVTYTQHPDFKDLIGKLERYGVNMTEEIQEASGGAFEGMTFVLTGKLSELTRN
EAKSMIENAGGKVTGSVSSRTDVVVAGEEAGSKLEKAQSLDVTVWNEKEFIEKMEQ
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaaatcaaggcactgcaggataagctgaaccgctataactacgaatatcat
gtgctcgatgacccgaccatccccgacagcgaatatgacaggatgctgcatgaactcatc
gccctggaggagcagtatccggaattcaagacggatacttcccccacagtaagggtgggc
ggcgcagtcctcagccgctttgagaaagtggcgcatgacacaccgatgctcagtcttggc
aatgccttcaacgaaggggacctcagggcattcgacaagcgggtccgggaagccgtggaa
gatgtggaatacatgtgcgaactcaagatagacggtctcgccgtttccttgaagtatgaa
tcgggacggttcgtccaggggacgacccgtggcgacggaacggtgggtgagaacatcacc
tccaatctccggaccatacgtgcgattccgctgactctggaccgccccctctcctttgaa
gtcaggggcgaggcgtatatgccgaaatcctcattcgagaagctcaatgcggagaaggag
aagaatggggagacgccattccagaatccaaggaatgcggcagcagggtcgctgcggcag
cttgatccaaaacttgccgccaagcggaacctgtcggtcttcctgtacagtgtgaatgat
ctgacagagctcgaggcggatacgcagagtgcagcgctggatgaattggacgcggcaggc
ttcaagaccaacagggagaggaagctcgtcagtgatatcgatgatgttctcgagtacata
gaatactgggagaaccaccgcaatgatcttgagtatgatatcgacggcatcgtcatcaag
gtcaatgccttcagcagccaggagcagatgggatatacggcgaaatcaccgagatgggcg
atcgcctacaagttccccgccgaagaggtggtcacggacctggtagacatcgaactgacg
gtagggcgtaccggtgcaattacaccgactgccatactgaagccggtcaaggtggccggg
acgaccgtggcgagagcatccctgcacaatcatgaactgatagaggagaaggacatccgc
atcaatgacaaggtgatcatccgcaaggccggggacatcattccggaggtcgtccgaccg
atccttgaggaaaggacagaccaggagatatatgaagcaccgaccaagtgcccgggatgc
ggtcatgatacggtcaagctggaggatgaagtggccatccgctgcatcaatcccggctgt
ccggcacagcttgtcgaaggcatgatccacttcgtctcaagaagcgcaatgaacatcgac
ggactcggtgaaaaggtggtccgccagctttttgaggccggactgatcaaggatgtcggt
gatatctacgctttgacatatgaagacctcattccgctcgagcggatgggcgataaaaag
attgaaaacctgctcggagcaatcaaggactccaaggacaatccgttgcggaagctgctg
gtcggcctcggcatcagatttctcggcacaaaagcatcggaactcattgcacaggaattc
ggctccatggaggagatcatgaagcagccgaaagagcgcttcatagaaatccctgaaatc
ggtgagaagattgcagactccatcgtcacctatacccagcatccggatttcaaagatctg
ataggcaaattggagcgctacggcgtcaatatgacagaggagattcaggaagcgtcaggc
ggagcgttcgagggaatgactttcgttctgaccggaaaactttcagagctgacacggaac
gaagcaaagtcgatgatagagaatgccggcggaaaagtgaccggcagcgtttccagcaga
acggatgtcgttgttgcaggggaagaagccgggagcaagcttgagaaggcacagtccctg
gatgtgacagtctggaacgaaaaagaattcatagagaagatggagcagtag
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