Sphingobacterium bambusae: SCB77_02640
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Entry
SCB77_02640 CDS
T09645
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbam
Sphingobacterium bambusae
Pathway
sbam03030
DNA replication
sbam03410
Base excision repair
sbam03420
Nucleotide excision repair
sbam03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbam00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SCB77_02640 (ligA)
03410 Base excision repair
SCB77_02640 (ligA)
03420 Nucleotide excision repair
SCB77_02640 (ligA)
03430 Mismatch repair
SCB77_02640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbam03032
]
SCB77_02640 (ligA)
03400 DNA repair and recombination proteins [BR:
sbam03400
]
SCB77_02640 (ligA)
Enzymes [BR:
sbam01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SCB77_02640 (ligA)
DNA replication proteins [BR:
sbam03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SCB77_02640 (ligA)
DNA repair and recombination proteins [BR:
sbam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SCB77_02640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SCB77_02640 (ligA)
MMR (mismatch excision repair)
DNA ligase
SCB77_02640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SCB77_02640 (ligA)
BRITE hierarchy
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
DNA_pol_lambd_f
HHH
Auto_anti-p27
5_3_exonuc
zf-NADH-PPase
Motif
Other DBs
NCBI-ProteinID:
WPL49350
LinkDB
All DBs
Position
597991..600009
Genome browser
AA seq
672 aa
AA seq
DB search
MLADIQERIAQLTQELNDYNYQYYVLANSLISDYDFDLKLKELEALELEYPQFRDPNSPT
QKVGGDITQKFNTIPHRWPMLSLGNTYNEQELRDFDERVRKVVGDQVQYVCELKFDGLSI
SLTYEDGKLAQAVTRGDGVQGDEVTNNVKTIRSVPHHLKKGDYPSLFEIRGEIFMHRAAF
ERLNKQREDAGVQTYANPRNFASGTIKLQDPKEVAKRPLDCFLYFLYADNRNRLFDSHWD
SIQAVKSWGFQICEHTRLCHSINDIISFINHWDEARHQLSYDIDGIVIKVNDYAQQEELG
FTAKSPRWAISYKYKAERVETELERITYQVGRTGAVTPVANLKPVVLAGTTVKRASLHNA
NEIARLDLHEGDTVYVEKGGEIIPKIIGVNGEKRAVGTAPIVYPSVCPECGTALVRQEGE
AVHYCPNEDGCRPQIVGKLQHFIGRKMMDIQGMGDETMETFYKLGLLRKIADIYSLKDHQ
EELKGLARFGAKSIDNMLAGIEQSKSKPFEKVLFALGIRHVGETIAKKLAQHFKTIDQII
AASAEEMAAVQDIGGRIADSVYSYLHDPQHLLEIGRLKEAGLQFEIEEQEVILAGDSLSG
KTFLISGVFADFSREELAQLIESHGGKMVSSISAKLNYLVAGDKMGPSKLAKAEKLQVPI
ISDQDILNMINP
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgttagcagatattcaggaaagaatcgcccaacttacgcaggagctaaacgactacaac
taccagtattacgttttggcaaactcccttatttcagactacgatttcgatctgaaacta
aaggaattggaagccttggagcttgaatatccgcaatttagagaccccaactcacctacg
caaaaggtgggaggcgacattacccaaaagtttaacaccattccgcatcgttggcccatg
ctatctttgggcaacacctacaatgagcaggagctccgtgattttgacgagcgcgtgcgc
aaggttgtgggcgatcaggtgcagtatgtatgtgaacttaaattcgatggcttatccatc
tcgttaacctacgaagacgggaagttggcgcaggccgttacccgtggcgatggtgtgcag
ggcgatgaggtgaccaacaatgtcaaaaccatacgcagcgtgccgcatcatctcaaaaaa
ggagattacccttccctattcgagatacgcggtgaaatatttatgcaccgtgccgctttc
gagcgcctgaacaaacagcgtgaagatgctggcgtgcagacctacgccaatccgaggaat
tttgcttcgggcaccatcaaattgcaagacccaaaggaagttgctaaaagacccttagat
tgctttctatactttttgtatgccgataacagaaacaggttgtttgacagccactgggac
agtatacaagcggtaaagagctggggcttccaaatatgtgaacatacacgcctgtgccat
tccatcaatgatataatttcctttatcaaccattgggatgaagcgcgacatcagctatca
tacgatatcgatggtatcgtgattaaagtaaacgactacgcgcaacaggaagagctgggc
tttacagccaagtcaccccgttgggccatatcttataaatataaggccgagcgggtggaa
accgagctggagcgcatcacctatcaggtaggtcgcaccggcgccgtgacgcctgttgcc
aatctaaagcccgttgtgctggccggtaccaccgtcaaacgcgcctcgctgcacaatgcc
aacgaaattgcgcgattggatctgcatgaaggcgatactgtctatgtagaaaaaggcggc
gaaattattcccaagattattggtgtgaatggagagaaacgtgctgtaggaacagcgccc
atcgtttacccaagcgtatgccccgagtgcggaacggcactcgttcgccaagaaggcgaa
gccgtgcactattgcccgaatgaagatggatgtagaccgcagatcgttggaaagctacag
cacttcatcggtcgcaaaatgatggatatccaaggcatgggtgacgaaaccatggaaacc
ttctacaagctaggtctcctgcgtaaaatagccgacatctattccttgaaagatcatcaa
gaagaactcaaaggcttggcacgcttcggcgccaagtccatcgataatatgttggccggc
attgaacaatccaaatccaagccttttgagaaggtgctttttgcgttgggcatccgccat
gtcggggaaaccattgctaaaaagttagcgcagcacttcaagactatcgaccaaattatc
gctgcaagcgccgaagagatggccgccgtgcaagatattggaggccgcatagccgacagt
gtgtacagctacctgcacgacccgcaacacctgttggaaatcggacggttaaaggaagca
ggccttcaatttgaaatcgaagagcaggaagttatccttgccggcgacagcctcagtggc
aagacctttttgatctccggcgtattcgccgacttctcgcgggaagagctggcacagctg
atcgaatcgcatggtgggaaaatggtttccagcatatctgcgaaactaaactaccttgtc
gcaggcgacaagatggggccctccaagctggcgaaggccgagaaactgcaggtgccgatc
atttcggatcaggatattttgaacatgattaatccataa
DBGET
integrated database retrieval system
