Sphingobium fuliginis KK22: H5V43_03135
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Entry
H5V43_03135 CDS
T06985
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbar
Sphingobium fuliginis KK22
Pathway
sbar03030
DNA replication
sbar03410
Base excision repair
sbar03420
Nucleotide excision repair
sbar03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H5V43_03135 (ligA)
03410 Base excision repair
H5V43_03135 (ligA)
03420 Nucleotide excision repair
H5V43_03135 (ligA)
03430 Mismatch repair
H5V43_03135 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbar03032
]
H5V43_03135 (ligA)
03400 DNA repair and recombination proteins [BR:
sbar03400
]
H5V43_03135 (ligA)
Enzymes [BR:
sbar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H5V43_03135 (ligA)
DNA replication proteins [BR:
sbar03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H5V43_03135 (ligA)
DNA repair and recombination proteins [BR:
sbar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H5V43_03135 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H5V43_03135 (ligA)
MMR (mismatch excision repair)
DNA ligase
H5V43_03135 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H5V43_03135 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
DNA_ligase_ZBD
HHH_2
BRCT
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QOT72179
UniProt:
A0A7M2GJP2
LinkDB
All DBs
Position
1:653352..655487
Genome browser
AA seq
711 aa
AA seq
DB search
MTDPTQMTEAEAANRLMRLAREIARHNRLYHDQDEPEIADADYDALVRENNALEAAFPHL
IRSDSPNAQVGAAPTSALRKVQHAVRMMSLDNGFADEDIAEFIARVRRFLALPEDAPVAL
TAEPKIDGLSCSLHYEKGELVLAATRGDGTTGEDVTANVRTIPDIPQRLTGQAVPDLFEV
RGEVYMAKADFVALNARLAAEADDPEKARQFANPRNAAAGSLRQKDAAVTASRPLRFLAH
GWGEVSAVPAETQLGVMQAIAGWGLPVSDRLTCVDTLEALIAHYRAIEAARADLPFDIDG
VVYKVDRLDWQQRLGFVAKAPRWAIAHKFPAERAQTTLESIDIQVGRTGKLTPVGRLTPV
TVGGVVVSNVTLHNADEIERLGVRPGDRIVVQRAGDVIPQVVDNLTRDEPRTPFAFPDHC
PVCHSEAVREEGEVDIRCTGGLICPAQRFERLRHFVSRAALDIEGLGEKSIQEFLDLGWI
AEPADIFRLKTHRADLLGREGWKEKSVDNLLAAIEAKRQPDAARLLFGLGIRHIGAVTAR
DLLRRYTTLEGISALAAGIIALRDAAAPAEGEEESRFRNRLDKAIAEYIGVENVGSAVGH
ALADFFHEPHNVDVWNDLLREVSPPDYLVETTASAVTGKTVVFTGKLETMSRDEAKAQAE
RLGAKAAGSVSARTDLVVAGPGAGSKLKQAAALGIDVIDEAAWAEIVKAAG
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaccccacgcaaatgaccgaagccgaagccgccaaccgcctgatgcgcctcgca
cgcgaaattgcgcgccataaccggctctatcacgatcaggacgagccggagatcgcggac
gcggactatgacgcgctggtccgcgagaataacgcgctggaggccgccttcccgcacctc
atccgcagcgattcccccaacgcccaggtcggcgccgcgcccacctccgcgctcaggaag
gtccagcacgccgtccgcatgatgagcctcgacaacggctttgcggacgaggacatcgcc
gaattcatcgcccgcgtccgccgtttcctcgcgctccccgaagacgcccccgtcgccctc
accgccgaacccaagatcgacggcctgtcctgctcgctccactatgaaaagggcgaactg
gtcctcgccgccacgcgcggcgacggcacgaccggggaagacgtcaccgccaatgtccgc
accatccccgacatcccgcagcgcctgaccgggcaagccgtccccgacctgttcgaggtg
cggggcgaagtctatatggccaaggccgatttcgtcgccctcaacgcgcgcctcgccgcc
gaagccgacgacccggaaaaggcccgccagttcgccaacccccgcaacgccgccgccggt
tcgctgcgccagaaggacgccgccgtcaccgccagccgccccctgcgcttcctcgcccat
ggctggggggaggtcagcgccgtccccgccgaaacccagctcggcgtcatgcaggcgata
gcaggctgggggctgcccgtctccgaccgcctcacctgcgtcgacacgctcgaagccctc
atcgcccactaccgcgccatcgaagccgcccgcgccgacctgcccttcgacatcgatggc
gtcgtctacaaggtcgaccggctcgactggcagcaacgcctcggcttcgtcgccaaggct
ccgcgctgggccatcgcccataaattccccgccgaacgcgcccagaccacgctggagtcc
atcgacatccaggtcggccgcaccggcaagctgaccccggtcggccgcctgacgcccgtc
accgtcggcggcgtcgtcgtctccaacgtcaccctccacaatgccgatgagatcgagcgg
ctgggcgtccgccccggcgaccgcatcgtcgtgcagcgcgccggcgacgtcatcccgcag
gtggtcgacaacctcacccgcgacgaaccgcgcacccccttcgctttccccgatcattgc
cccgtctgccattcggaagccgtgcgcgaggagggggaggtcgacattcgctgcaccggc
ggcctcatctgccccgcccagcgtttcgaacggctgcgtcatttcgtcagccgcgccgcg
ctcgacatcgaagggctgggcgaaaagagcatccaggaatttctcgacctgggctggatc
gcggagccggccgacatattccgcctgaaaacgcatcgcgccgacctgctcggccgggag
gggtggaaggaaaagtccgtcgacaatctcctcgccgccatagaggccaagcgccagccg
gatgccgcccgcctgcttttcggtctgggcatccgtcatatcggcgcggtgaccgcccgc
gacctgctcaggcgctatacgacgctggaggggatcagtgcgctcgctgccggcatcatc
gcgctgcgcgacgccgccgcccctgcggagggggaggaggaatcccgcttccgcaaccgc
ctcgacaaggcgatagccgaatatatcggggtcgagaatgtgggatcggcggtcggccac
gccctggccgatttcttccacgagccgcataatgtggacgtctggaacgacctgctgcgg
gaggtctccccgcccgactatctggtcgaaaccaccgccagcgcggtcacgggcaagacg
gtggtgttcaccggcaagctcgaaaccatgagccgcgacgaggccaaggcgcaggccgaa
cgactgggcgccaaggctgccggttcggtcagcgccaggaccgacctggtggtagccggt
cccggcgcgggctcgaagctcaaacaggccgcggcgctgggtatcgatgtgatcgacgaa
gccgcatgggccgaaatcgtcaaggccgccggatag
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