Shewanella baltica BA175: Sbal175_1687
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Entry
Sbal175_1687 CDS
T02014
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbb
Shewanella baltica BA175
Pathway
sbb03030
DNA replication
sbb03410
Base excision repair
sbb03420
Nucleotide excision repair
sbb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sbal175_1687
03410 Base excision repair
Sbal175_1687
03420 Nucleotide excision repair
Sbal175_1687
03430 Mismatch repair
Sbal175_1687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbb03032
]
Sbal175_1687
03400 DNA repair and recombination proteins [BR:
sbb03400
]
Sbal175_1687
Enzymes [BR:
sbb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sbal175_1687
DNA replication proteins [BR:
sbb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sbal175_1687
DNA repair and recombination proteins [BR:
sbb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sbal175_1687
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sbal175_1687
MMR (mismatch excision repair)
DNA ligase
Sbal175_1687
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sbal175_1687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AEG10963
UniProt:
G0AV12
LinkDB
All DBs
Position
2006028..2008085
Genome browser
AA seq
685 aa
AA seq
DB search
MQDIQLDTLLSEDVTPENASQVMQALSQSLNEHNIRYYVDDAPSITDSEYDRLMQRLLKL
EALYPHLIVADSPTQRVGGLALAKFDQITHPKPMLSLDNAFDEADFSAFHKRVTDKVGEV
SFCCEPKLDGLAVSILYRHGVLERAATRGDGSVGEDITENVKTIKSIPLKLRGNDFPELV
EVRGEAFMPKAAFEALNDRARAKDEKLFVNPRNAAAGSLRQLDSKITAARSLAFYAYALG
VVEPDSHPLAKTHFEQLQQLKSWGLPVSSEIKVCAELSQVYDYYKDILTRRGDLAFEIDG
VVMKVNDIDQQQRLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPV
FVGGVTVSNATLHNADEIARLGIKVGDTVIIRRAGDVIPQIVAIVPERRPETATDIVFPH
NCPVCGSLVERLEGEVVARCSGGLFCEAQRKEAIKHFASRKALDIDGMGDKVVEQLIDKE
LVQSPADLFKLTASMMTMLDRMGMKSATNLAAAIEAAKTTTLARFLYALGIREVGEATAA
NLAAHFASLDALRVATVEQLTEVEDVGTVVAQHVAHFFAQPHNLEVIDALIAAGVHWPAI
EAPSAEAQPLKGQTWVLTGTLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSK
LAKAQELGVKVMDEDELLALLAANA
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacattcaactcgatacacttctgtctgaagacgttaccccagaaaacgcatcg
caggtgatgcaggcgctcagccaatcactgaacgagcacaacattcgttactatgtggac
gatgcgccgagcattactgattctgagtacgacaggttgatgcagcgtttactcaagctt
gaggcgttatatccccatttgattgtggctgattcaccgactcaaagggtgggcggattg
gcgctcgccaagtttgatcagatcactcatcctaagcctatgttaagtctggataacgcc
ttcgatgaggctgatttcagtgctttccacaaacgtgtcaccgataaagtcggtgaggtg
agtttttgctgcgagcctaaacttgatggccttgccgtgagtatcttgtatcgccatggc
gtgcttgagcgcgctgcgacccgcggcgatggttcagtaggtgaagacatcactgaaaac
gttaaaaccattaaatcgataccgcttaaattgcgcggtaatgatttccctgaactcgtt
gaagtgcgcggcgaagcctttatgcctaaagccgcctttgaagcgctgaacgacagggcg
cgcgccaaggatgaaaaactctttgttaatccccgtaacgccgccgccggcagcttgcga
caactcgacagtaaaattaccgccgcccgctcattggctttttatgcctatgcgctaggg
gttgttgagccggattcccatccgttagctaaaacccatttcgagcagttacagcagctt
aagtcgtggggtttacccgttagtagcgaaatcaaagtctgcgctgaattaagccaagtc
tatgattactacaaagacattcttactcgtcgcggcgatttagcctttgaaatcgatggc
gtagtgatgaaagttaacgacattgaccagcagcaacgtttaggttttgtggctaaatct
ccccgctgggcgattgcctataaattccctgcacaggaagaaatgaccctgctcgaaggg
gttgattttcaagtgggccgtaccggcgcagtaacgccagtggcgcgcttaaagccagtg
tttgttggtggcgtgacggtatcgaatgcgacgctgcacaatgccgatgaaattgcccgc
ttaggcattaaagtcggtgacactgtgatcatccgccgcgctggcgatgtgatcccacaa
attgttgccatagtgccagaaagacgtcctgaaacggcgactgacattgtatttccgcat
aattgccctgtgtgtggcagtttagtcgagcgtctcgaaggtgaggtagtggcgcgctgt
agcggtggtttattctgcgaagctcagcgtaaagaagcgattaagcatttcgcatcccgc
aaggctttggatatcgatggcatgggcgataaagtcgtcgagcaattgattgataaagaa
ctcgtccaaagtcctgcggatctgtttaagctcaccgcctctatgatgactatgctcgac
cgcatggggatgaagtcggcaaccaatttagcggcggcgattgaagcggccaaaaccacg
acacttgcgcgtttcttatatgctttgggtattcgcgaagtgggcgaggcgactgccgca
aaccttgcggcgcactttgccagtttagatgcgctgcgggtggcaactgtggagcagtta
actgaagtggaagatgttggcactgttgtggcccagcatgtggcccacttttttgctcag
ccgcataaccttgaggttatcgatgccttaatcgccgctggtgtgcattggccggccatt
gaagcgccaagtgcagaggcgcagccgcttaaaggtcaaacttgggtattgactgggacc
ttaaatcaactcaatcgcaacgatgctaaagcgcagctgcaggcgctgggggcaaaagtt
gctggcagtgtgtcgaaaaataccgattgcttagtggcaggtgaggcggcaggttcaaaa
cttgcgaaagcgcaggagcttggcgttaaagtgatggatgaggatgagttattggcactc
ctcgccgcgaacgcttga
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