Streptomyces bingchenggensis: SBI_03577
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Entry
SBI_03577 CDS
T01678
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbh
Streptomyces bingchenggensis
Pathway
sbh03030
DNA replication
sbh03410
Base excision repair
sbh03420
Nucleotide excision repair
sbh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SBI_03577 (ligA)
03410 Base excision repair
SBI_03577 (ligA)
03420 Nucleotide excision repair
SBI_03577 (ligA)
03430 Mismatch repair
SBI_03577 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbh03032
]
SBI_03577 (ligA)
03400 DNA repair and recombination proteins [BR:
sbh03400
]
SBI_03577 (ligA)
Enzymes [BR:
sbh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SBI_03577 (ligA)
DNA replication proteins [BR:
sbh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SBI_03577 (ligA)
DNA repair and recombination proteins [BR:
sbh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SBI_03577 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SBI_03577 (ligA)
MMR (mismatch excision repair)
DNA ligase
SBI_03577 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SBI_03577 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
Zn_ribbon_TFIIB
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
ADI06698
UniProt:
D7CE11
LinkDB
All DBs
Position
complement(4635697..4637883)
Genome browser
AA seq
728 aa
AA seq
DB search
MAGEQQSTVPAEARDKHAILAEQVEEHRFRYYVKDAPIVSDAEFDRLLRELEALEEEYTE
LRTPDSPTQKVAGAYETEFTEVEHRERMLSLDNAFDGEELAAWAERIVRELGDSGYHFLC
ELKVDGLAVNLTYERGRLTRAATRGDGRTGEDITPNVRTISVIPDRLKGDRIPELVEVRG
EVYFPGARFEELNARLVEAGKPPFANPRNAAAGSLRQKDPKVTASRPLRMVVHGIGAREG
FDIDRQSQAYELLHEWGLPTAAHFKVVDSLDAVSEYIAYYGDPKRRHSLEHEIDGVVVKL
DEIPLQGRLGSTSRAPRWAIAWKFPPEEVNTKLVDIRVGVGRTGRVTPFAVVEPVTVAGS
EVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSEREFVMPAECPEC
GTPLQPMKEGDVDLRCPNARYCRAQIRERVYYLAGRKCLDIENFGYVAAGALTQPLDPAE
PPLKDEGDLFDLKVEQLLPITSYVLDPDSGLPKRDPKTGEEKVVTFFANQKGEPKKNTLA
MLDNIEAAKQRPLARIITGLSIRHVGPVAAAALAREFRSLDRIAEASEEELAAVEGVGPT
IAASVKQWFAEDWHREIVEKWRRAGVLLEEEAPEDEGPRPLEGLTVVVTGTLQTHTRDGA
KEALQNRGAKVAGSVSKKTDFVVVGDNPGSKYDKAMQLKVPVLDEDGFTVLLEQGPEAAR
EAAVTPAE
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgaacaacagtcgacagtgcccgccgaggcgcgggacaagcacgccatcctc
gctgagcaggtcgaagagcaccgcttccggtactacgtcaaggacgccccgatcgtcagc
gacgccgagttcgaccgtctgctgcgcgagctggaggcgctggaggaggagtacacggag
ctcaggacgcccgactcgccgacccagaaggtcgcgggggcgtacgagaccgagttcacg
gaggtcgagcaccgcgagcggatgctcagcctggacaacgcgttcgacggcgaggagctg
gccgcctgggccgagcgcatcgtcagggagctcggggactccgggtatcacttcctgtgc
gagctcaaggtggacggcctcgcggtcaacctcacgtacgagcggggccggctgacccgc
gccgccacccgcggcgacgggcgcaccggcgaggacatcacgcccaatgtgcggacgatc
tccgtgatccccgaccgcctcaagggcgaccgcatcccggagctggtggaggtccgcggc
gaggtctacttccccggggcgcgcttcgaggagctgaacgcacggctggtggaggccggg
aagccgcccttcgccaacccgaggaacgcggcggcgggctcgctccgccagaaggacccc
aaggtcaccgcgagccgcccgctgcgcatggtggtccatggcatcggcgcgcgcgagggc
ttcgacatcgaccggcagtcgcaggcgtacgagctgctgcacgagtgggggctgccgacc
gccgctcacttcaaggtcgtggattcgctcgatgccgtcagcgagtacatcgcgtactac
ggggatcccaagcggcgtcattcgctggagcacgagatcgacggcgtcgtcgtcaagctc
gacgagatcccgctgcaggggcggctcggctccacctcgcgggcgccgcgctgggccatc
gcctggaagttcccgccggaagaggtcaacaccaaactggtcgacatccgggtcggcgtc
ggacgcaccgggcgcgtcactccgttcgccgtggtcgagccggtcacggtggcgggctcg
gaagtcgaattcgcgaccctgcacaatcaggacgtcgtcaaggccaaaggcgtgttgatc
ggcgacacggtggtgctgcgtaaagcgggcgatgtcattccggaaattgtggggccggtc
gtcgatctccgggacggcagcgagcgggagttcgtgatgcccgccgagtgcccggagtgc
ggcactccactgcagccgatgaaggagggcgatgtcgatctgcgctgccccaacgcccga
tactgccgggcccagatccgtgagcgggtctactacctcgcgggccgcaagtgtctggac
atcgagaatttcggctatgtagccgccggggcgctcacccagccgctggaccccgccgaa
ccgccgctgaaggacgagggcgatctgttcgatctgaaggtcgaacagctgctgcccatc
acgtcgtacgtactggacccggacagcggactgcccaagcgcgaccccaagaccggcgag
gagaaagtcgtcaccttcttcgccaatcagaagggcgagccgaagaagaacaccctcgcc
atgctggacaacatcgaggcggccaagcagcgcccgctggcccgtatcatcaccggcctt
tcgatccgtcatgtcgggccggtcgcggcggccgcgctggcccgtgagttccgctcgctg
gaccggatcgccgaggcgagcgaggaggaactggccgccgtggaaggcgtgggccccacc
atcgcggcctcggtcaagcagtggttcgccgaggactggcaccgcgagatcgtggagaag
tggcgccgggccggagtgctgctggaggaggaggcgcccgaggacgaggggccgcgcccg
ctcgaagggctcaccgtcgtggtcacgggcaccctgcaaacgcacactcgggacggggcg
aaggaggcgctgcagaaccgcggtgccaaagtcgcgggttccgtttcgaagaagacagat
tttgttgttgtcggcgacaatccaggatcgaagtacgacaaagccatgcagttgaaggtt
cccgtgctcgatgaggatggatttacggtcctcctcgaacaggggcccgaggccgcgaga
gaggctgcggtgacgcctgcggagtag
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