Sorghum bicolor (sorghum): 8061178
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Entry
8061178 CDS
T01086
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
8061178
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8061178
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
8061178
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
8061178
NCBI-ProteinID:
XP_002466304
UniProt:
C5WX87
A0A921RWQ3
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All DBs
Position
1:complement(4421401..4431840)
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AA seq
990 aa
AA seq
DB search
MGVPAFYRWLADRYPLTVSDAEEEEPVELEPGAFVPVDLRRPNPNGLEFDNLYLDMNGII
HPCFHPEGRPAPTTYDEVFKSIFYYIDHLFGLVRPRKLLYMAIDGVAPRAKMNQQRSRRF
RAAKDAADAAAEEERLRKEFEAEGRTLAQKEKSEAIDSNVITPGTQFMFVLSTALQYYIQ
LRLNHTLGWQSVKIILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVISMPGQQEKCFLCGQAGHLAAECRGPSQPDNSVELPPIHKKKYQF
LNIWVLREYLAKDLEIVDAPFKINFERLIDDFVFMCFFVGNDFLPHMPTLEIREGAINLL
MSIYRSEFTSMGGYLTDGGEVILDRVEHFIQSVAVNEEQIFQKRARIQQARENNEEKHRI
QRENSEENQYVDKVKLGEPGYRERYYAEKFKEEAESKPIDQVRRDVVQKYVEGLCWVMRY
YYQGVCSWQWFYPYHYAPFASDLKGLAELEITFFLGQPFKPFDQLMGTLPAASSNALPKY
YGDLMTDPDSPLKSFYPKDFEIDMNGKRFAWQGIAKLPFIDEMRLLAETRKLEDSLTEEE
RFRNRTMFDIIYVRDTHPLSSQIMFLYQNYYHLSRTDPYVIPIQPAVSGGMNGFLCLSER
NWYIVTVTSPVRGFNGIAQNRVLNATYLNPQYHKHIPEPPAGVIIPAKILKPSDFKPFPV
LWHEDNSRRQTRERPQVSGALSGSLLGAAAHRLVKNSLQIKSGNAAGLIDMPYRGAPYSP
GNRPRPAGPLGYERGFVDNPYHAHMSRSVPNPHPQFFGDSQANKQPMRILERPNPRSHDA
GIRASMSKLTIREGPRPHQNNRMQNSGYWPNQPHSNHFAGPPAQRPMQNISFIPQRPFQT
GGFPQQRPVNGVPPPLPPSNWIGKQPNGGHTGVPAKHDPRTAPDRQPKQDNPRSQQDKRQ
QATTKVYRVKTQATNGNGLSESGKQEESAA
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccgcgttctaccggtggctggcggaccgctacccgctgacggtgtccgac
gcggaggaggaggagcccgtggagctcgagcccggcgccttcgtccccgttgacctccgc
cgccccaaccccaacggcctcgagttcgacaacctctacctcgatatgaatggcatcatc
cacccctgcttccaccccgagggccggccggcgcccaccacctacgacgaggtgttcaag
tcgattttttattacatcgaccacctcttcggcctcgtccgccccaggaagctcctctac
atggccattgacggtgttgctccaagggcaaagatgaaccagcagaggtccaggcgattc
cgggctgctaaggacgcggctgatgcggcagcagaggaggagaggctgaggaaggagttt
gaggcagagggtaggactctagcccagaaggagaagtcggaggcaatcgactccaatgtc
attactccagggacgcagttcatgtttgtactatctacggcgcttcagtactacatacag
ttgaggctgaatcacacgcttggatggcagtctgtcaagataatattgtctgattccaat
gtccctggagagggagagcacaaaattatgtcatacatccgcctgcagcgcaatcttcct
ggctttgatcccaatacgcgccattgcttatatggcctggatgctgatttgattatgctt
gctctagcaactcatgaggttcacttctcaattttaagagaggtgatctccatgccaggg
caacaagaaaaatgttttctttgtggtcaagctgggcatttggctgctgaatgcagaggt
cctagtcagcctgataattctgtggagctacctcctattcataaaaagaagtaccagttt
cttaacatatgggtgttgcgtgaatacctggcaaaggatttggaaattgtagatgccccc
ttcaagataaactttgaacgtcttattgatgattttgtgtttatgtgtttctttgttggc
aatgactttcttcctcacatgccaactttggaaattcgtgagggtgccattaatcttctc
atgagtatctacaggtcggagttcacatcaatgggtggttacctaactgatgggggtgag
gttatattggaccgagtggaacatttcatccagtctgttgcggtcaatgaagaacaaatt
ttccagaaacgggcacgcattcaacaggcacgcgagaacaatgaagagaagcatagaata
cagagggagaattctgaggagaatcaatatgtggataaggtgaagttaggagagccaggg
tacagggagcgttattatgctgagaagtttaaagaagaggcggagtcaaaacccattgat
caagttcggagagatgttgtccagaaatacgtggaaggtctctgttgggttatgagatac
tactatcaaggtgtttgttcatggcagtggttctatccctatcattatgcgccttttgca
tctgatctaaaaggcttggctgaattggaaataacctttttcttgggtcaacctttcaag
ccatttgatcaattaatgggaacgctaccagctgcaagctccaatgctctgccgaaatac
tatggggatttgatgactgatccagattcaccattgaagtctttctatcccaaagatttt
gagatagacatgaatgggaaacgttttgcatggcagggtattgcaaaattgccttttatt
gatgaaatgcgtctgcttgcggagacaagaaaacttgaagattctttgacagaagaagag
agattcaggaacaggactatgtttgacataatttatgttagagatactcacccattgtcc
tctcagattatgttcctgtatcagaactactaccatctatcaagaacagacccttatgtt
attcccattcagcctgctgttagtggtggaatgaatggattcctatgtttatctgaaagg
aactggtatattgtcactgtaacttctccagttagggggttcaatggcattgctcagaac
agagttttgaatgctacctatcttaatcctcagtatcacaaacacatcccagagcctcca
gcgggggtcatcatacctgcgaagatactgaaacctagtgatttcaaaccctttcctgtg
ttgtggcatgaagataatagtcgtcgacaaacaagagaaaggcctcaggtttctggagcc
ctgtctggttctctcttaggagcagctgcacaccgtctggtgaaaaactccctccagatc
aaatctggcaatgctgctgggttaattgatatgccatacaggggtgcaccctacagccct
ggaaacagaccaaggcctgctggaccattagggtatgagaggggttttgtggataatcca
taccatgcacacatgtctagaagtgttccaaaccctcaccctcagttctttggtgattct
caagctaacaaacagccaatgcggatactagaacggccaaacccccgaagtcatgatgct
ggtatccgtgcatcaatgtcaaagttgacaatccgagaagggccaaggcctcatcaaaat
aataggatgcagaattctgggtactggcccaatcaaccacattctaatcactttgctgga
cccccagcccagcggcctatgcagaacataagttttatacctcagcgacctttccaaact
ggaggattcccgcagcagagacctgtaaatggggttccaccaccattacctcccagtaac
tggattgggaagcaaccaaatggaggccacacgggtgtacctgcaaaacacgatccaagg
acagctccagatagacagcctaagcaggataacccaagatcacaacaggataagagacag
caggctactaccaaggtataccgtgtcaaaactcaagctactaatggtaatggtttgtca
gagtcaggtaaacaggaagaatctgcagcgtaa
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