Sorghum bicolor (sorghum): 8061681
Help
Entry
8061681 CDS
T01086
Name
(RefSeq) nuclear pore complex protein GP210
KO
K14314
nuclear pore complex protein Nup210
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
8061681
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8061681
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
8061681
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_GP210_15th
Ig_GP210_16th
Ig_NUP210_7th
Ig_NUP210_1st
Big_2
Ig_NUP210_2nd
Ig_NUP210_3rd
Ig_TMEM132_5th
Ub-RnfH
Motif
Other DBs
NCBI-GeneID:
8061681
NCBI-ProteinID:
XP_021308334
LinkDB
All DBs
Position
2:complement(18920441..18947785)
Genome browser
AA seq
1953 aa
AA seq
DB search
MGSPPAFAAAVAMVAALLCASAAANPAGGPHMADLSVLLPPRMTKPVEYRLIGGDGCFSW
SWDHHDLISVKPEYNDSSRCSTSARLASIAPYSGRRETSVYATDIISGIMIHCKVFVDKI
SRISIFHHAVKIDLDEIATLRVHAFDDEENVFSTLVGLQFLWHLTPRLVDNSSNHLVRIP
LKETHLSDCGGFCGDMNIRFELEDKNLGSDFFVVKGIEIGQEVVKAQMFEPQFDHVIDTI
TLTVAEAMSLEPSSPVLVTVGVLVKFKLKVFRQKVAQAVKLPSQYHRWHATNSSVAQVDS
LGILHALSLGFTKVVVEDTRVSGHEQVSSLHVVIPRTLFLYLVPVMDDSAYLHGITNIPS
SKVWYVYPGRKYMVLAKAFAEGFDAREIYITEENELKLESSTMEFWNLLQVPDSSTGSYE
VQTSRLLSPVSQGQGHLVASLTYLTEASGPTKVLKLVQEVNVCSKVKAFWDEGMENSNVI
YLPWVPGIYQEIEMKAIGGCGKTLDDYKLFSSDEDVASVSDSRIVRAKKPGQAVIRVVSA
FDFLNFDEVIVEVSIPSILSILPVFPVEVPVGTRLHSAAVLKTSAGHSFSQCNNFNAFIR
WSLLSDDESFHILNTAEASSIEDIKHNSGYWGQNGNPCAWVSLGASSAGRSTIVATFAVD
LDSDIETFGGPISLEATSKISAYYPLVVLQGGNGNQFGGYWFDLSGIHSRIKNMDNNSPK
ELYLVPGSTMDVFLFGGPERWDQVVDFVETVDVIGESKNRITSSTAVQKLSSGLYRVSCL
SKVSYKLLFSRGNMVGKDHPVPAISKSEFAVICDFPSEITLIANENENRLDILEDARKAD
RGPDRLQASPIVISNGRNIRLAAASIHVNGRFFANSSSLRLKWEATGCEGLAYFDKTKSA
EMLDESAWERFLVLQNSTGVCTVRATVVDFSTKYAGQTHEEEYTFHSLTDAIQLQIVSSL
RVTPEYVLLVFHPEAQENLIVSGGTCSLDASTNDTHVVQIVTHPGKALCSQLILEAKGLG
EAIVTIQDVGLSPRATTHSLARVANVDWIKIIAEEHISLMEGSTKDLQILAGTQDGQIFG
NSQFKYMDIELHLGDEILELIGPSESMGGPKFSIKAAKIGITSLYVSTKQHSGQRVLSQV
VKVEVYRPLQIHPEYIYLTPGASFVLSVKGGPKTGVSIEYSSLNREIVEVQNITGKLSAK
SVGNSTVRAAILANGGTLVCEAFGRVEVDIPVSMTLNTQSERLCIGCRMPVYPSLPKGDL
FSFYETCQSYNWMIADEKVAIFQSAKSWQYRLDQGLYTDGKNSPWFSNGSSKSFITHMIG
RSAGKTKISISVTCDFLLPGTSGSVVSYNASKTILVVPDPPLALVLPMTWLFPPFYTTTS
LLPRSAHSLGEPNSLDLESSIGYSLLRGSGRIVDGSKIQTGESNSVDCIQAKDHSAGRTE
IAACLRVAEVAQVRVAAAESSIQIAYLSINDRVELDIKYADELGYIFNEAHGVVPVKIET
NYPDVVSILMPRDFNGTYGTSERFILQARSHGTALIRLHANNVPNKVDFIMVSVGAQMYP
RDVILHSGQHLNFTIIGDSMDMRGFGHWLSSNEKIVHINQITGEAQARSEGVAEVIFKGS
NLKLQTTVTVLKVNKIVVDAPAETLTNAAGLPDGYKFSVRFSDSFEHSTGSSVSPINVPF
ECKVDPSFVGFVEPWIDHATKKSYCLFHPYSPAQLLPVKLNPNEGFLHILVRANLKEDPK
VTGSAHALFVKGFYIKESGKLNLTPSCNHSVITIDGNTDIELFWNAKDLLRVSRIDTSEN
NGVLSRIVYRVEALKRQSFSDKVTIILPATGQTEEVEVSYDTGEKAEPPSSWGLTTSAVM
LTCTIVTIVTVALFMKLLQRPTRQAPSRNMAASTPVRAPAANPAAMADPASPANGQLSPR
TPQPFMEYVRRTIDDTPYYKRNARRRFNPQNTY
NT seq
5862 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgccgccggcctttgcggcggcggtcgcaatggtggccgcgctgctatgcgcc
tcggctgccgccaaccccgcaggcgggcctcacatggcggacctgagcgtgctgttgcct
ccgcggatgacgaagcctgtcgagtaccgcctcatcggcggggatggatgcttctcctgg
tcatgggatcatcatgatcttatttcagttaaaccagagtacaatgatagcagcagatgc
tcgactagtgctcgtttggcatcaattgccccatactccggccggagggagacttctgtc
tatgcgactgatattatcagtggaatcatgatacactgcaaagtattcgtagacaagatc
tctcggatcagtattttccaccatgctgttaaaattgatctagatgaaattgccacatta
cgtgtacatgccttcgatgatgaagaaaatgtgttctcgacattggtgggattgcagttt
ttgtggcaccttaccccgaggttggttgataatagtagcaatcatcttgttcgtattcca
ctgaaagaaacacatttgagtgactgtggtggcttttgtggtgatatgaatattcggttt
gagctagaagacaagaatcttggttcagatttctttgtggtgaaaggtattgagatcggc
caagaggttgttaaagcccagatgtttgagcctcagtttgatcatgtgattgacacaatc
acattaactgttgctgaagccatgtcactagagccatcatcaccagttctcgtgactgtt
ggtgttttggtgaagtttaaactcaaggtattccggcaaaaagttgctcaagcggttaaa
ttaccatcacaatatcatcgttggcatgcaacaaactcttctgtggcacaagtggattcc
ttgggtatcttgcatgcattgagtctggggtttactaaggtggttgttgaagacacaaga
gtttctggtcatgaacaagtatcttctctacatgttgttattccacggacactcttcctt
tatctggtccctgttatggatgattctgcttatcttcatgggataacaaatattccatcc
tcaaaagtatggtatgtttatcctggaagaaaatacatggtccttgccaaagcatttgca
gagggatttgatgctagggaaatatatattacagaggaaaatgagctcaaactggagagc
agtaccatggaattctggaacttattgcaggtgccagacagttctacaggttcctatgaa
gtgcaaacttctagattgttaagtcctgtttcccagggacaagggcatttagttgcttcc
ttaacttacctaacggaggcatctggaccaacaaaggttctcaagcttgtgcaagaagtt
aatgtttgtagtaaggtgaaggcattttgggatgaaggaatggagaactccaatgttatt
tacctgccctgggttcctggaatttatcaggaaattgaaatgaaggcaattggagggtgt
ggtaagacgctggatgactacaagttattttcctctgatgaggatgttgcttctgtgtct
gactctcgtatcgtgcgtgcaaaaaagcctggtcaagctgtcatccgagtagtttctgcg
ttcgatttcttgaattttgatgaggtcattgttgaagtttccattccttcaatactgtct
atcttgccagtctttcctgtggaggtgcctgttggaacacgacttcattctgctgcggtg
ttaaaaacatctgctggacactcattctcacaatgtaacaattttaatgcttttataagg
tggagtctactatctgacgatgagtcttttcacattcttaacactgctgaggcttcgagc
atcgaggacataaaacacaattcaggttattggggccaaaacgggaatccttgtgcctgg
gtctctctgggtgcatcttctgctggcagatccacaatagttgcaacatttgcagttgat
ttggattcagatattgagacatttggtggacctatttctctggaggcaacttcaaaaatt
tctgcatattatcctcttgtggttcttcaagggggaaatggaaaccaatttggtgggtac
tggtttgacttatctggaatacatagtaggattaagaacatggataacaactctcccaag
gagctatacttagttcctggatcaacaatggatgtttttctctttggaggaccagaacgt
tgggatcaagttgttgattttgttgaaaccgttgatgttattggtgaatccaaaaatcgt
attactagttctactgctgtgcagaaactatctagtggactataccgagtatcttgccta
agcaaagtgagctataaattgctgttttcacgtgggaacatggttgggaaagatcatcca
gtgcctgcaatttccaaatcagagttcgctgttatttgtgacttcccatcagaaataaca
ttgatagcgaatgaaaatgaaaaccgacttgatatattggaagatgctaggaaagctgat
cgtggtccagatagattgcaagcatcacccattgtaatctccaacggaagaaatatacgt
ctagctgctgcgagtatacatgtaaatggaagattttttgctaattcatcttctcttcgc
ctgaaatgggaagccactggatgtgaagggcttgcttactttgacaaaaccaaatctgct
gaaatgcttgatgagtcagcttgggagagatttcttgtcctacagaattctacaggagtg
tgcactgtacgtgctacagttgttgacttctctaccaaatatgctggccaaactcatgag
gaagaatacacatttcatagtctcacagatgctattcagttgcagattgtttcttcatta
agagtcacccctgaatatgtcttgttagttttccatcctgaagcacaggaaaatttgatt
gtaagtggtggaacatgctccctagatgcttctaccaatgacacacatgtggtgcaaata
gttacacatccgggaaaagccttatgttctcaattgattcttgaggctaaaggcttaggc
gaagctatagtcacaatccaggatgttggcctttccccaagagcaactactcattctttg
gcgagagttgcaaatgttgactggattaagataatcgcagaagagcacatcagtcttatg
gaaggaagtacaaaagatcttcaaatattagctggcactcaagatggacaaatatttggc
aattctcagttcaaatatatggacattgagttgcatcttggcgatgagattctggagctt
attggtccaagtgaatcaatgggtggacccaaattttcaattaaagctgcaaaaattggc
attacatctctatatgtcagtactaaacaacactctggacagagagttttgagtcaggtt
gtcaaggtggaagtgtacagaccattgcaaatacatcctgagtatatttacctcactcca
ggcgcctcttttgtgctttctgttaaaggtggtccaaaaactggagtttccattgagtac
tcaagtttgaacagggaaattgtagaagttcaaaatattactgggaaactatctgcaaaa
tctgtggggaactctactgtacgtgctgctattttagcaaatggaggtaccttagtttgt
gaagcttttggaagagtcgaagtggacatcccagtgtctatgacactgaatactcaaagt
gaacgtctttgtattggctgtaggatgccagtttatccatctctgcctaagggtgatcta
ttttccttctatgaaacttgccaaagttacaattggatgatagcagatgagaaggttgcg
atattccaatcagctaaatcttggcaatacagacttgatcaaggactatatacggatgga
aaaaacagtccatggttttccaatggcagcagcaagtcttttatcactcatatgattgga
aggtctgctgggaaaactaaaatttccatttcagttacttgtgacttcttgctacctggc
acctctggatctgttgtatcatacaatgcgtccaagaccattcttgtggttccagatcct
ccccttgcacttgtactacctatgacttggttattcccacccttttatactactacgagc
cttttgcctagatcagcacattcacttggagaaccaaactcacttgacctggagagctcc
attgggtattctctgctaaggggcagtggtaggatagttgatggaagtaagattcagact
ggtgaaagcaattcagttgattgtattcaagcaaaagatcactcagctggaagaacagaa
atagcagcatgtctacgggttgccgaggttgcacaagtgcgggtagctgctgcagaatca
tcaatccagattgcctatctatccataaatgatagagttgaactggatataaaatatgct
gatgaattaggttatatcttcaacgaagctcatggagtagtccctgtaaagattgagaca
aattatcctgatgttgtgtccattctcatgccaagagattttaatggtacatatggcaca
agtgaacgttttattcttcaggcgagaagtcatggaactgctcttataaggctccacgca
aacaatgtccccaataaagtggatttcataatggtatctgtaggagcacaaatgtatcct
agggatgtgatccttcattctggccagcacctgaacttcactattatcggagacagtatg
gacatgcgtggatttggtcactggttaagtagcaatgaaaagattgtgcacatcaaccag
ataactggtgaagcacaagcacgtagtgaaggtgtagcagaagtaatcttcaaaggttca
aatcttaagctgcaaacaactgtcaccgtgctcaaggtgaacaagatagttgttgatgct
cctgcggagacactgactaatgctgctggcctgcctgatggatacaagttctctgtgaga
tttagtgattcatttgagcacagcactggatcatctgtgagcccaattaatgtccccttt
gaatgcaaggttgacccttcttttgttgggtttgttgagccatggattgaccatgccaca
aagaaatcgtactgcctgtttcatccatattcacctgcacagctgttgccggtgaagttg
aacccgaatgaaggatttttacacattttggttcgtgcaaatctaaaggaagacccaaag
gtgacaggatctgcacatgcccttttcgtcaaagggttttacattaaagaatctgggaaa
ttaaatttgactccaagttgcaatcatagtgtcattactattgatggaaatactgatatt
gagttgttctggaatgctaaagatttactcagagtcagtcgtatcgacacaagtgagaac
aatggtgttcttagtcgaattgtttaccgggttgaagcgctaaaaaggcaatcattctct
gacaaggttactatcattcttcctgccactggtcagactgaagaagttgaagtcagctac
gatacaggagagaaggctgagccaccatcatcatggggcctaaccacatctgctgttatg
ctcacatgcaccatagtgacaatagttactgttgcacttttcatgaagttgctgcagaga
cctaccagacaggcaccatcaaggaacatggcagcatccacaccagtacgagcaccagca
gccaatcctgcagccatggctgatcctgcgtccccggctaatggtcagttatctcctcgt
acgccgcagcctttcatggagtacgtgaggaggaccatcgatgacacaccgtactataag
cgcaatgccaggaggcgattcaaccctcagaacacttactga
DBGET
integrated database retrieval system
