Sorghum bicolor (sorghum): 8065086
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Entry
8065086 CDS
T01086
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
8065086
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sbi03041
]
8065086
Spliceosome [BR:
sbi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
8065086
Complex C
U5 SnRNP specific factors
8065086
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
Septin
Ras
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
8065086
NCBI-ProteinID:
XP_002438662
UniProt:
C5Z5Q8
LinkDB
All DBs
Position
10:complement(52864775..52870914)
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AA seq
995 aa
AA seq
DB search
MDDSLYDEFGNYIGPELADSDADDDSDAGGASPSPSASGSPSPAARSSSGSPSRPAALMD
VDDDEGDPSQQAVVLAEDKKYYPTAEEVYGPGVEALVMDEDEQPLEMPIIAPPRVVKFEV
GTRAAATSTYASTDFLLGLAGNPALVRNVTLVGHLQHGKTVFMDMLVEQTHEVDTFDSEG
ERHVRFTDTRVDEQERQVSIKAVPMSLVLEGGNGKSYLCNIMDTPGHVNFSDEMTAALRL
ADGAVLVVDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPNDAYFKLRHT
LEAINDLISSCSTTVGGTQLVDPAAGNVCFASGAAGWSFTLQSFAHLYLKIHGIQFDHEK
FASRLWGDLYFHPDSRTFKKKPPKEGANRSFVEFILEPLYKIYSLVVGEQKGNVESKLAE
LGVTLSNAAYKLNVRPLLRLACRSIFGTATGFTDMLVKHIPSVKDAAARKIDHIYTGPQD
SSIVDAMKKCDPNGPLMVNVTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDD
EEDMTVKEVTKLWVYQARYRVAISKAPAGSWVLIEGVDASIMKTATICPMNIDEDVYIFR
PLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLD
SIMKDLRELYSEVEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMLAEPLEKGLAE
DIENGLVSLDSRQKEITDFFRQRYQWDVLAARSIWAFGPDKQGPNILLDDTLSIEVDKNL
LNAVKDSIVQGFQWGAREGPLCDEPIRNVKFKILNANIAPEPLHRGGGQIIPTARRVVYS
AFLMANPRLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYIVKAFLPVI
ESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKSIVLRPLEPAPIQHLAREFMVKTR
RRKGMSEDVSINKFFDEAMMNELAQQAADIHLQMM
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagcctctacgacgagttcggcaactacataggcccagagctcgccgactcc
gacgccgatgacgactccgacgctggcggcgcctcaccgtccccctccgcgtccggctcg
ccgtcaccggcggcgcgctcctcgtcgggctccccctcccgcccagccgcgctcatggac
gtcgacgacgacgagggcgacccgtcccagcaggccgtggtgctcgccgaggacaaaaag
tactaccccaccgccgaggaggtgtacggacctggcgtggaggcgctcgtcatggacgag
gacgagcagccgctcgagatgcccatcatcgcgccgccccgcgtcgtgaagttcgaggtc
gggacccgcgccgcggccacgtctacctacgcgtccaccgacttcctcctcggcctcgcg
ggcaaccccgcgctcgtccgcaacgtcaccctcgtcggccacctccagcacgggaagacg
gtgttcatggacatgctcgtagagcagacacacgaagtggacaccttcgactctgagggg
gagcgccatgtgcggttcactgacacaagggtggacgagcaggagaggcaggtctccatc
aaggctgtgccaatgtcgcttgttctcgaggggggaaacggcaagtcatacctgtgcaac
atcatggacacgcccgggcatgtcaacttctctgatgagatgactgcagcactgagactt
gcggatggcgctgtgctcgttgttgatgctgccgagggagtaatggttaatactgagagg
gcaattcgtcatgcaattcaagaaaggcttcccatcgttgttgtgattaacaaggttgac
agattgataacagaactaaagctgcccccaaatgatgcatatttcaagctgaggcatact
ctagaggcaattaatgatcttatctcatcatgttctactacagtaggtggcactcagctg
gtggatcctgctgctggaaatgtatgttttgcaagtggtgctgctggctggtcttttacc
ttacagtcttttgcccatctctacttaaagattcatgggattcaatttgaccatgagaaa
tttgcatctcgcctatggggagacctgtattttcaccctgattctagaacctttaaaaag
aagccgccaaaggaaggagctaacagatcatttgttgagtttatccttgagcctctgtac
aaaatttatagtctggtcgttggtgagcaaaaagggaatgtggaatcaaagcttgctgaa
ttgggtgtcacgttgagcaatgcagcttataagcttaatgttagacctttgctgaggtta
gcttgccgctcaatttttggcactgctactggttttaccgatatgttagtgaaacatatc
ccctcagtgaaggatgctgctgcaaggaagatagaccacatatacactggaccacaagat
tcctctattgtggatgctatgaaaaaatgtgatcccaatggaccccttatggttaacgta
acaaaactatatccaaagtctgattgcagtgtctttgatgcctttggacgagtttacagt
ggcacaatacagactggacagactgtgagggtccttggagaaggctattctccagatgat
gaagaggatatgactgtcaaagaggtgaccaaattgtgggtttatcaggcacgataccgt
gttgcaattagtaaagcccctgctggctcttgggttcttattgaaggtgtagatgcatca
ataatgaaaactgctactatatgtcctatgaatattgatgaagatgtatacatatttaga
cctctacgtttcaacaccttgcctgttgtaaaaatagctgctgagcctctcaacccaagt
gagcttcctaaaatggtcgaaggtcttcgtaaaattagcaagagctatcctcttgctatt
accaaggttgaggagtctggagagcacactatcctggggactggtgaactatatctggat
tccataatgaaggacctcagagagctttattcagaggttgaggtgaaggtagcagatcct
gttgttacattttgtgaaacagttgttgatacttcttctatgaaatgttttgctgaaaca
cctaacaagaggaacaaaattactatgcttgccgaaccattagagaagggcttagcagaa
gatattgagaatggtcttgttagcctggattcaaggcagaaagaaattactgacttcttt
cgccaacgctaccagtgggatgtgcttgcagctaggtcgatatgggcttttggacctgac
aagcagggtcctaacattcttctggatgacacactttcaattgaggttgacaagaacctg
ctcaatgcggtcaaagattcaattgttcaagggttccagtggggtgctagagaaggtcct
ttgtgtgatgaaccaattaggaacgtgaaattcaagatcttaaatgcaaacatagctcca
gaaccattgcatcgtggtggtggtcagataattcccacagcacgtcgtgttgtctactct
gcattccttatggctaatcctcgccttatggaacctgtgtattatgttgagatccaaaca
ccaattgactgtgtgtctgcaatttatacggtgctatcccggcggcgtggtcacgtaaca
gctgatgtgcccaagccaggcactccaatatacattgttaaggcatttttacctgttata
gagtcttttggatttgagacagatctcagataccatacccagggacaagccttttgtttg
tcagtattcgatcactgggctattgttcctggtgaccccttagataagagtattgttctt
cgccccctggagccagcacctatacagcaccttgcccgtgagttcatggtaaagaccagg
cgaaggaagggcatgagtgaagatgtgagcatcaataaattcttcgacgaggccatgatg
aatgagctggctcaacaggctgctgatatccacttgcaaatgatgtag
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