Sorghum bicolor (sorghum): 8078213
Help
Entry
8078213 CDS
T01086
Name
(RefSeq) lycopene epsilon cyclase, chloroplastic
KO
K06444
lycopene epsilon-cyclase [EC:
5.5.1.18
]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi00906
Carotenoid biosynthesis
sbi01100
Metabolic pathways
sbi01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00906 Carotenoid biosynthesis
8078213
Enzymes [BR:
sbi01000
]
5. Isomerases
5.5 Intramolecular lyases
5.5.1 Intramolecular lyases (only sub-subclass identified to date)
5.5.1.18 lycopene epsilon-cyclase
8078213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lycopene_cycl
DAO
Pyr_redox_2
HI0933_like
GIDA
Thi4
FAD_binding_2
Pyr_redox_3
NAD_binding_8
FAD_binding_3
Motif
Other DBs
NCBI-GeneID:
8078213
NCBI-ProteinID:
XP_002455838
UniProt:
C5XNU3
LinkDB
All DBs
Position
3:52269576..52274032
Genome browser
AA seq
533 aa
AA seq
DB search
MGLSGATISAPLGCRGLRRGAVGGGKARKAEAERWRRAGWSRRVGGPKVTCVATEKHDET
AAVGVEFADEEDYRKGGGGELLYVQMQATKPMESQSRIASKLLPISDENTVLDLVIIGCG
PAGLSLASESAKKGLTVGLIGPDLPFTNNYGVWEDEFKDLGLASCIEHVWKDTIVYLDNN
KPILIGRSYGRVHRDLLHEELLRRCYEAGVTYLNSKVDKIIESPDGHRVVCCDKGREIIC
RLAIVASGAASGRLLEYEVGGPRVCVQTAYGVEVEVENNPYDPSLMVFMDYRDCFKEEFS
HTEQENPTFLYAMPMSSTRVFFEETCLASKDAMSFDLLKKRLMYRLNAMGVRILKIYEEE
WSYIPVGGSLPNTDQKNLAFGAAASMVHPATGYSVVRSLSEAPRYASVISDILNNRVPAE
YLLGNSQNYSPSMLAWRTLWPQERKRQRSFFLFGLALIIQLNNEGIQTFFEAFFRVPKWM
WRGFLGSTLSSVDLILFSFYMFAIAPNQLRMNLVRHLLSDPTGSTMIKTYLTL
NT seq
1602 nt
NT seq
+upstream
nt +downstream
nt
atgggcctctcgggcgcgacgatctccgcgccgctcggctgccgtgggctgcggcgcggg
gcggtcggcggaggtaaggcgcggaaggcggaggcggagaggtggcggcgggcgggctgg
agccgacgcgtgggcggaccgaaggtgacgtgcgtggccaccgagaagcacgacgagacg
gcggcggtcggcgtggagttcgcggacgaggaggactaccgcaagggcggcggcggcgag
ctgctttacgtgcaaatgcaggccaccaagcccatggaaagccagtccaggatcgcttcc
aagctattgcccatatctgatgaaaacacagtacttgatttggttatcattggttgtggt
cctgctggtctttctctagcctcagagtcagctaagaaaggtctcaccgtaggtctcatt
gggcctgaccttccattcacaaataactatggtgtgtgggaggatgaatttaaagatctt
ggtctagcgagttgtatcgagcacgtctggaaggatactattgtctacctagacaataac
aagcccatactgattggccgttcttatggcagggtgcaccgtgacttgctccatgaggag
ctactgagaagatgctatgaagctggcgtgacatacctgaactccaaagtggacaagatc
atagaatctccagatggacacagagtagtctgttgtgataagggtcgtgagataatttgc
aggcttgccattgttgcttcgggggcagcatctggtaggcttctagagtatgaggttggg
ggtcctcgtgtttgcgtgcagactgcatacggagtagaagttgaggtggaaaataatcca
tatgatcccagcttaatggttttcatggactacagagattgtttcaaagaggaattctca
cacactgaacaagaaaatcccactttcctgtatgctatgcccatgtcatccacacgagtt
ttctttgaggaaacatgcttagcttctaaagatgctatgtcctttgatctacttaagaag
aggctgatgtatcggttgaatgcaatgggagttcgtatcctgaaaatttatgaggaggaa
tggtcctacattcctgttggagggtccttaccaaacacagatcagaaaaatcttgcattt
ggtgctgcagcaagtatggtgcatcctgcaacggggtactcagtggttagatctttgtct
gaggctccaagatatgcttctgtgatatccgacatcttaaataaccgagttcctgcagaa
tatttgcttggaaattctcaaaattacagtccatcaatgcttgcatggagaacactatgg
cctcaagaaaggaaacgtcagcgatccttcttccttttcggattagcgttgataatccaa
ctgaataatgaaggcatacaaacattctttgaagcctttttcagggtgccgaaatggatg
tggcggggatttcttggctcaaccctttcatcggtcgatctcatactattttcattctac
atgtttgcaatagctccaaatcaattgcgaatgaacctcgtcagacatctcctctctgac
ccgactggctcaaccatgatcaagacctacctgaccttataa
DBGET
integrated database retrieval system
