Sorghum bicolor (sorghum): 8083058
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Entry
8083058 CDS
T01086
Name
(RefSeq) 5'-3' exoribonuclease 4 isoform X1
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
8083058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8083058
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
8083058
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
8083058
NCBI-ProteinID:
XP_021317205
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All DBs
Position
5:2033512..2039454
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AA seq
805 aa
AA seq
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MGIPSFYKWVVNKYPSIISPVKEEPEECPDRIIYDNLYLDMNYIIHRCFHPQDLMHADID
VCPPMTVSEVFESLFEYMDRLFRIVRPTRLLYLAVDGVAPCAKMNRVRRGRFHSARMATS
EEIEDYEMRKELRAQGKEETPQEISEVSDPNVITPGTEFMEKLSQALEYYIRGRFNSDPW
WRDIMVILSDANVPGEGEHKIMSFVRAQGNMEGYDPNTRHCLFGHDADLIMLALASHEVH
FSILREDVLLPNQAETEGNPKKPFLFLNIWVLREYLEIEFKILDPVCEPDIERLIDDFIF
ICFLMGNDFIPHIPSLETHEGAVDLLIEVYKTTFNKMGGYIINTDKVKDKNGAYLEVSRL
EIFFHELSMYEEKIFLKRYKLEQDLLLKTYHEMLREASESERPELRQKLDDLLFNEERPY
DRIRLGLPGWKSRFFREYFGAETSNEIGKLQNDMAQKYLEGLCWVLQCYFADVPSWSWYY
PFYVAPFVSDLKGLSRVDISFTVDKPLRPFDQLMAVLPMQSWCALPKCYKEMMGRKEFDY
PRLEHDTKGRHFLWNGISEELLLSATKVVDKKLTTHESRRNTTRQEKIFLHRDSSSLPHN
EVTEQTSHCSVQKLPIDSATSGIGGWIAPDDNDGFSDGSFHSPTTNLQDITSDQTISGTF
FNPEAANPVPRLLRNVSVPDKTVTGADISKRPLWHTYPGSRPPRIIQRPDTIWKPSTPAS
PREEHKNAGTGWIGRGKGNALATAETHLKSSSNSYRRGGGGSSSRRFDDDGAYSFRPLGS
APWTAGDSSRSGGAGHGGIAQPRGW
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgggaataccttctttctacaagtgggtcgtcaacaagtacccaagcatcatctcccct
gtgaaggaggaaccagaggagtgccctgatagaatcatctacgacaacctctacctcgac
atgaattacatcatccatcgttgcttccacccacaggacctgatgcatgcagacatagat
gtgtgccctccgatgacggtcagtgaggtgtttgagtccttgtttgagtacatggaccgc
ttgttccgcatcgtcaggccaacaaggctcctctacttggcagtagatggcgttgctcct
tgcgccaaaatgaaccgagtgcgaaggggacgtttccactcagccaggatggcaacaagt
gaggagattgaagattatgaaatgcggaaggaattaagagctcaagggaaggaggagaca
ccacaagagatttctgaggtttctgaccccaatgtcatcaccccaggtactgagttcatg
gagaagctatcacaagcccttgagtactacatccgtggcagatttaatagtgacccctgg
tggagagacatcatggtaatactctctgatgcgaatgttcctggagaaggagagcacaag
atcatgtcttttgtccgtgcacaaggcaacatggaaggctatgatcccaacactcgacac
tgcttgtttgggcatgatgcagatctgataatgcttgctttggcatctcacgaagtccac
ttctctattttacgtgaggatgtgctcctcccaaatcaggcagaaacagaagggaatccg
aagaaaccatttctgtttttgaacatatgggttctgagagagtacttggagattgaattc
aagatactggacccagtctgcgagcctgatattgagaggctaatagatgacttcatcttt
atttgttttctgatgggaaacgatttcatcccacatattccatcacttgagacgcatgag
ggtgcagttgatcttctcatcgaagtgtacaaaacaacgttcaacaaaatgggagggtat
attatcaacacagacaaagtcaaagataaaaatggtgcatatctggaagtctcaaggttg
gaaatattttttcatgaactctccatgtatgaagagaaaattttcctcaaaagatataaa
ctggaacaggatttgttgctgaagacatatcacgaaatgttgcgtgaagcttcagaaagt
gaaagaccagaactgagacaaaaattagatgatctcctttttaatgaagaacgcccgtat
gacagaataagactaggattaccaggatggaagtcccggttcttcagggagtattttggt
gccgaaacttctaatgaaattggaaagctgcagaacgacatggctcaaaaatatttagaa
ggactttgttgggtgcttcaatgctattttgcagacgttccatcatggagctggtactac
ccattctatgttgctccttttgtatctgatctcaaaggtctatctagggttgatatatct
ttcactgtggacaaaccactacgaccatttgatcagcttatggcagttttaccaatgcaa
agctggtgtgctctcccaaaatgttacaaggaaatgatgggtcgcaaagaatttgactac
ccgaggttggagcatgacacgaaggggagacatttcttgtggaatggtatctctgaggaa
ctgctgctttcggccaccaaagtggtagataaaaagctcacgacccatgaatcgagacgg
aataccactaggcaagagaagatctttctgcacagggactcaagctctctgccacacaat
gaagttactgaacaaacatcgcactgttcggtgcaaaagcttccgatagattcagctacg
agtggaattggaggatggatagcgcctgatgacaatgatggcttcagcgacggttccttc
cactcgcccacaacaaacctgcaggacattacaagtgatcaaacaatatcaggtacgttc
ttcaaccctgaggcagccaatccagttccaagactacttcgcaatgtcagtgtccctgac
aagactgtcacgggagccgacatctcaaagaggccactctggcacacgtacccgggctca
aggccgccgcgcatcattcagaggccggacaccatctggaagccgagcacgccggcgtcg
ccacgggaagagcacaagaacgctggcacggggtggatcgggcgggggaaagggaacgcc
cttgccaccgccgagacgcatctgaagagcagcagcaacagctacaggagaggtggtgga
ggaagcagcagcaggaggttcgacgacgacggtgcatacagtttccggccgcttggaagt
gcgccgtggaccgccggagacagcagccgaagcggaggcgccggccatggcggcattgcg
cagccacgtggttggtag
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