Sorghum bicolor (sorghum): 8084685
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Entry
8084685 CDS
T01086
Name
(RefSeq) ABC transporter I family member 19
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sbi
Sorghum bicolor (sorghum)
Pathway
sbi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sbi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
8084685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sbi03019
]
8084685
Messenger RNA biogenesis [BR:
sbi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
8084685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
ORC-CDC6-like
AAA_28
AAA
NACHT
AAA_15
AAA_5
PduV-EutP
AAA_23
AAA_25
AAA_18
AAA_24
AAA_22
AAA_30
AAA_33
AAA_16
Arf
SRP54
Rad17
AAA_14
Zeta_toxin
Motif
Other DBs
NCBI-GeneID:
8084685
NCBI-ProteinID:
XP_002454753
UniProt:
C5XV77
A0A921R912
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Position
4:complement(67119327..67124181)
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AA seq
295 aa
AA seq
DB search
MMAGEGNGDEGWRRSGIEVSALQFGYDGQPPLFARFNLRVAPGSRCLLIGANGSGKTTLL
KILAGKHMVGGRDVVRVLNGSAFHDTQLVCSGDLSYLGGSWSRTIGSAGDVPLQGDFSAE
HMIFGVDGVDPVRREKLVDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPYKVLLLDEITV
DLDVVTRMDLLDFFKEECEQREATIVYATHIFDGLETWATDFAYIQEGELRRSGRYSDIE
ELKSAKNLLSVVESWLRSETKLPKKELPRPETQARRSSPLDASPFRSSRHMAYYR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgatggccggcgaagggaacggggacgaagggtggaggcggagcggcatcgaggttagc
gccctgcagttcggctacgacgggcagccgccgctcttcgcgcgcttcaacctccgcgtc
gcacccggctcccgctgcctcctcatcggcgccaacggatcaggcaagaccacactcttg
aagattcttgcgggaaagcatatggttggaggaagagatgtggtccgtgttctcaatggt
tccgcttttcatgatacacaactagtgtgcagtggagatctttcgtacttgggtggttct
tggagccgtactattggttcagctggtgatgttccgcttcaaggcgatttctctgctgag
cacatgatttttggagttgatggggttgatcctgttaggcgagagaagctggttgatctg
ctagacattgatctgcaatggcgcatgcataaagtttcagatgggcagcgacgcagggtg
caaatctgcatgggtcttcttcatccatacaaggtgcttttgcttgatgaaatcactgtt
gatctggacgttgtgaccagaatggatctgcttgatttctttaaggaagagtgtgagcag
agggaagctaccatcgtgtacgcgactcatatatttgatggactcgagacatgggctacc
gactttgcgtacatccaagaaggcgagctgagaagatctggcagatactctgatatcgaa
gagctaaagagcgccaagaacctgctgtcagtagttgagtcgtggctgagatcagagacc
aaactcccaaagaaggaacttccacgtcctgagacccaggccaggcgttcctcgccgttg
gacgcttctcctttccgttcatcgcgccacatggcctactaccgttga
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