Syngnathoides biaculeatus (alligator pipefish): 133495437
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Entry
133495437 CDS
T09681
Symbol
scn4aa
Name
(RefSeq) sodium channel protein type 4 subunit alpha A
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sbia04040
]
133495437 (scn4aa)
Ion channels [BR:
sbia04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
133495437 (scn4aa)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Lustrin_cystein
GPHH
Motif
Other DBs
NCBI-GeneID:
133495437
NCBI-ProteinID:
XP_061666051
LinkDB
All DBs
Position
22:10489527..10521463
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AA seq
1849 aa
AA seq
DB search
MAPLLPPPGADAFRLFTRESLAEIERLQAERRKNKAARVDGHDEAEEEEAEAPNADLEAG
KNLPWIYGDPPAELINTPLEDLDPFYKAQKTFIVLSKGNTIYRFNAEPACYLLSPFSGLR
KGAIKILIHSLFSMFIMITILSNCVFMTMSNPPAWSKNVEYAFTGIYTFEAGIKVLSRGF
CVGSFTFLRDPWNWLDFMVISMAYITEFIDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKMVDVMVLTVFALAVFALVGLQLFMGNLRHKCVRWPIHGNGTADWLNVTDLLT
PFNESLGVNSSDCCNGTFNFIEYIENSENYYFLDGSKDPLVCGNGSDAGVCPEGFTCMKA
GGNPDYGYTSFDSFGWAFLALFRLMTQDYWENLFQMILRAAGKTYMLFFVVVIFLGSFYL
INLILAVVAMAYDEQNQATLREAKEKEEEFQRVLEQLRSQEQDQCLGSRDSPNGGKSPSL
HSVSELSLECNEAVKDCNGKMVPSLVVRSPTLDESVPEKELLERSPGMLHPDELHSDEHG
QRQRSSSAMEELEDAHRPCPPGWYKFADIFLKWNCCQPWLALKKWLYVIVMDPFFDLAIT
ICIVLNTLFMAMEHYPMTKEFDNMLSVGNLVFTGIFTAEMFFKLIAMDPYYYFQVGWNIF
DSIIVTLSLAELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTL
VLAIIVFIFAVVGMQLFGKNYKDCVCKISDECELPRWHMNDFFHAFLIVFRILCGEWIET
MWDCMEVSGAAMCLIVFMMVMVIGNLVVLNLFLALLLSSFSGDNLSTAEDDGELNNLQIA
VGRISRGIDWLKAAVAEMPQRILDDKPKATEDANVEVLEMNDLDPGGDVSKADGIANSLS
PGRTSGAIMGGELALSVPIAEGESDDDDHDYDSNISTCGNSLHDGESLEDEIGHLREVKL
MGVASDDGDVSLCSTADYQPPDPEPVEEEEEEPDPVEPEACFTDNCVRRWPCLTVDVNTI
GGKRWWTLRRTCFAIVEHDWFETFIIFMILLSSGALAFEDIYIERRRIIKIILEYADKVF
TFVFVMEMVLKWTAYGFKTYFTNAWCWLDFFIVDISLISLVANWLGYSELGPIKSLRTLR
ALRPLRALSRFEGMRVVVNALVGAIPSIFNVLLVCLIFWLIFSIMGVTMFAGKFYRCINT
TSGERFPAAEINNRSECLALQEATGEARWVNVKVNYDNVAKGYLSLLQVATFKGWMDIMY
AAVDSREVEEQPSYEINLYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGDKDIF
MTEEQKKYYEAMKKLGSKKPQKPIPRPTNFLQGLVFDLISQQFFDIFIMVLICLNMVTMM
VETDNQSPEKEEFLFKVNLAFIAVFTSECVLKLFALRQYFFTNGWNIFDFIVVIVSIAGT
MLSDLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFL
IMFIFSIFGMSNFAYVKKEAGIDDIFNFETFGGSIICLFQITTSAGWDGLLLPMLNSVPP
DCDPDFENPGTDVRGNCGSPGMGMMFFSSYIIISFLVVVNMYIAIILENFNVAQEESSDA
LCEEDFEMFNDTWEKFDTDGTMFIEYARLSDFCDTLQEPLRVAKPNRLRLIQMDLPLVIG
DRIHCLDVLMAVTEMVLGDTLEMAAMRESIKTKFVQSNPTSDSFAPITTTVRHKEENRAA
AVIQRTYRSHLLRRGLRHAAFLYRSKTGSSEDPPEREGLIAHKMGALYGSLADLPEEKVS
TGPRPGPVDPGSSVMAVPVEITNEVVLHSAPGPDQGLGSFQEHLRESLV
NT seq
5550 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccctgctccctcccccgggcgccgacgcattccgcctcttcacccgggaatcg
ctggcagagatcgagcggctccaagcggaaaggcgaaaaaacaaggcggcccgagtagac
ggacatgacgaggccgaggaggaggaggcggaggcccccaatgccgacttggaagcgggc
aagaatctgccgtggatttacggagaccctccagcggagttgatcaacacgccgctggag
gacctggaccccttctacaaggctcagaagacgttcatcgtgcttagcaaaggcaacaca
atttacaggttcaacgctgagccggcgtgttacctcctgagccccttcagtggcttaaga
aaaggagccatcaaaatcctcatccattcattatttagcatgttcatcatgatcaccatt
ttgtccaactgcgtgttcatgaccatgagcaacccgccggcgtggagtaaaaatgtcgag
tacgcttttactgggatttacacttttgaggccggcatcaaagtgttgtccagagggttc
tgtgttggctcctttacattccttcgagacccgtggaactggctggatttcatggtgatc
agcatggcatacatcactgagttcatcgacctcggtaacgtgtctgccctcaggaccttc
cgtgtgcttcgagctcttaaaaccatcactgtgattcctggtctgaaaaccattgtgggt
gcgctgatccagtcggtgaagaaaatggtggacgtgatggtcctgacggtcttcgctttg
gctgtgttcgccttggtcggtctgcagttgttcatgggcaacttgcggcataagtgcgtg
cgctggcccatccatggcaacggcaccgccgattggttgaacgtcaccgacctgctgacg
cctttcaacgaaagcttgggtgtcaacagtagcgattgttgcaacggcaccttcaatttc
atagagtacatcgagaactcggaaaactactacttcctggacggcagcaaagatcctctt
gtatgtgggaacggttccgatgctggagtctgccctgaaggtttcacttgcatgaaggcc
ggcgggaacccagattacggctacaccagcttcgactcattcgggtgggccttcctggcg
ctcttcagactcatgacccaggactactgggaaaaccttttccagatgatcctgcgggcg
gcgggcaaaacgtacatgctcttcttcgtggtggtgatcttcctgggctccttctacctc
atcaaccttatcctggcggtggtggccatggcgtacgatgagcagaaccaggccacgctg
cgcgaggcaaaagagaaagaggaggagttccagcgcgtcctcgagcagctcaggagccag
gagcaggatcaatgtcttggaagtagagactctccgaacggcggcaagtcgccaagtctt
cactcggtttctgagttgagcctggagtgcaacgaggccgtcaaagactgtaacggcaag
atggtcccaagccttgtggtgcgatcacccaccttggatgagtctgttccagagaaagaa
cttctggaaaggtctccaggcatgcttcatccagatgagcttcattcggatgagcacggc
cagaggcagaggtcttctagtgccatggaagagctggaagacgctcacaggccgtgtccg
ccgggctggtacaagtttgctgacattttcctcaagtggaactgctgtcaaccgtggctg
gccctcaaaaagtggctgtacgtcatcgtgatggaccccttcttcgacctggccatcacc
atttgtatcgtgctcaacacgctcttcatggccatggaacactaccccatgaccaaagag
tttgacaacatgctctctgtgggcaacttggttttcactgggattttcacggcggagatg
tttttcaaactcatcgccatggacccctactactacttccaagtgggctggaacattttc
gacagcatcatcgtcactctcagcctggcggagttgggcctggcgaacgtacaggggctc
tcggtgctgcgctccttccgtctgcttcgtgtcttcaagctggctaagtcctggcccacg
ctcaacatgctgatcaagatcatcgggaactcggtgggcgccctggggaacctgactctg
gtgctggccatcatcgtcttcatcttcgccgtggtgggcatgcagctcttcggcaagaac
tacaaagattgcgtgtgcaagatctccgatgagtgcgagctgccacgctggcacatgaac
gactttttccacgctttcctcatcgtcttccgcatcctgtgcggcgaatggatcgagacc
atgtgggactgcatggaggtgtccggcgctgcgatgtgtcttatcgtcttcatgatggtc
atggtcattgggaatctcgtggtgctgaacctcttcctggcgctgctgctcagctcattc
agcggcgacaacctatcgacggcggaggacgacggcgagctgaacaacctccaaatcgcc
gtcggcaggatctcgcgaggcattgactggctcaaggcagctgtcgctgaaatgccacag
aggatactggacgataaacccaaggcaactgaggatgccaacgtggaggtgttggagatg
aatgacttggaccctggcggggatgtcagtaaggcagatgggatagcaaattctttgtca
ccgggacggacttctggcgccattatgggtggagagctggctcttagtgtgcccatcgcc
gagggagaatcagacgatgacgaccacgactacgactccaatatctccacttgtgggaat
agccttcatgatggtgaaagcctagaagacgagatcggccatttaagagaagtcaagctg
atgggcgtggcaagcgatgacggggacgtgtcgctgtgcagcacggcggactatcagccg
ccagatcctgaaccggtggaagaggaggaggaagagccggatccagtggagccagaagct
tgcttcactgacaactgcgtgcggcgctggccctgcctcaccgtagatgtgaacacgatc
ggaggcaagcgatggtggactctgcgtaggacctgctttgccattgtggagcacgactgg
tttgaaaccttcatcattttcatgatcctgctgagcagcggcgctctggcttttgaagac
atttacatcgagcggcggcgaatcatcaaaattattctggagtacgctgataaagttttc
acctttgtcttcgtcatggagatggttctgaaatggacagcgtacggtttcaagacctac
ttcaccaatgcttggtgctggctggactttttcattgttgatatttcgctcattagtttg
gtggccaactggttgggttactccgagctggggcccatcaaatccctccgaactctgagg
gcgctgaggcctttacgtgccctctccagatttgaaggcatgagggtggtggtgaacgcg
ctggtcggcgccatcccgtccattttcaacgtgctgctcgtatgcctcatcttctggctc
atcttcagcatcatgggagtcaccatgttcgccggcaaattctaccgctgcatcaacacc
acttcgggggagcgctttcccgctgccgagatcaacaaccgcagcgagtgcctggccctg
caggaggccacgggggaggcccgctgggttaatgtcaaggtcaactacgacaatgtggcg
aagggttacttgtcgctgctccaagtggcaacctttaaagggtggatggacataatgtat
gctgctgtcgactcgagagaagtggaggagcagccgtcgtacgagatcaacctgtacatg
tacatctactttgtcatcttcatcatcttcggctccttcttcaccctcaacctcttcatc
ggcgtcatcattgacaacttcaaccagcaaaagaaaaagttgggagataaggacatcttc
atgacggaagagcagaagaagtactacgaagccatgaaaaaactcggttccaagaagccg
cagaagcctattccacgtcccactaacttcctccagggcctggtctttgacctcatcagt
cagcagttttttgacatattcatcatggtgctcatctgcctcaacatggtgaccatgatg
gtggagacggacaaccagagcccggaaaaggaggagtttctcttcaaagtcaacctggcc
ttcattgcggtcttcaccagcgagtgcgtgctgaagctgtttgccctgcgccagtacttc
ttcaccaacggttggaacatattcgacttcatcgtcgtcatcgtctccatcgctggcacg
atgctgtcggacctgatcgagaagtacttcgtgtcaccgaccctcttccgcgtgatccgt
ctggccaggatcggacgcatcctgcgtctcatcaaaggggccaaaggcatccggacgctc
ctcttcgccctgatgatgtcgctccccgccctcttcaacatcggcctgttgctcttcctc
atcatgttcatcttctccatcttcggcatgtccaacttcgcctacgtcaagaaagaggcg
ggcatcgacgacatcttcaacttcgagacgtttggcgggagcatcatttgcctcttccag
atcacgacgtcggccggctgggacgggctcctgctcccgatgctcaacagcgtgcccccc
gactgcgatcccgactttgagaaccccggcacggacgtgaggggcaactgcggcagcccg
ggcatgggcatgatgttcttcagcagttacatcatcatctcttttctggtggtggtcaac
atgtacatcgccatcatcctggagaacttcaacgtggcgcaggaggagagcagcgatgcg
ctttgcgaggaggactttgagatgttcaacgacacatgggagaagtttgacacggatgga
accatgttcatcgagtacgcccgcctttcagacttttgcgacacgctgcaggagccactg
agggtcgctaagcccaaccgccttcgcctgatccaaatggacctgccgctggtcatcggc
gaccgcatccactgcctggatgtcctgatggccgtcacggaaatggtcctgggagacacg
ctggaaatggcggccatgcgggaaagcatcaagaccaagttcgtccagagcaaccccacc
tcggactccttcgcgcccataaccaccactgtgcgccacaaggaggagaaccgcgccgcc
gccgtcatccagcggacctaccggagccacctgctccgtcgcggcctccgccatgctgcc
ttcctgtaccgctccaagaccgggtcctccgaggacccgccggagagggagggactgatt
gcgcacaagatgggagctctttacggcagcctcgctgacctccccgaggagaaggtgtcg
acaggaccccgacctggtcctgttgatccagggtcgagtgtcatggcagtacctgtggaa
attacaaatgaggtggtactacattctgcccctgggccagatcaaggtcttggcagcttt
caagaacacctcagggagtcgcttgtgtaa
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