Syngnathoides biaculeatus (alligator pipefish): 133498402
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Entry
133498402 CDS
T09681
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04010
MAPK signaling pathway
sbia04120
Ubiquitin mediated proteolysis
sbia04140
Autophagy - animal
sbia04144
Endocytosis
sbia04620
Toll-like receptor signaling pathway
sbia04621
NOD-like receptor signaling pathway
sbia04622
RIG-I-like receptor signaling pathway
sbia05132
Salmonella infection
sbia05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133498402 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
133498402 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
133498402 (traf6)
04140 Autophagy - animal
133498402 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
133498402 (traf6)
04621 NOD-like receptor signaling pathway
133498402 (traf6)
04622 RIG-I-like receptor signaling pathway
133498402 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
133498402 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
133498402 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133498402 (traf6)
04121 Ubiquitin system [BR:
sbia04121
]
133498402 (traf6)
Enzymes [BR:
sbia01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133498402 (traf6)
Membrane trafficking [BR:
sbia04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
133498402 (traf6)
Ubiquitin system [BR:
sbia04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
133498402 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
TRAF6_Z2
zf-C3HC4_4
zf-RING_5
TRAF3_RING
U-box
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_11
DM
Motif
Other DBs
NCBI-GeneID:
133498402
NCBI-ProteinID:
XP_061671152
LinkDB
All DBs
Position
3:28648070..28664008
Genome browser
AA seq
553 aa
AA seq
DB search
MSGSDSHKGSLEEVSYEGAAGAELSSCALEMLKRERESIHSPSESPGASTILPSALVQGY
DVEFDPPLERKYECPICLMALRNAIQTPCGHRFCKSCIEKSIQDTGQRCPVDNEMLLEDQ
LFPDNFAKREILSLTVRCPNAGCTDKMELRHLENHLAQCPFATMACPQCQESVRKSYLEE
HKTIDCRRRPMCCPDCVASFVYEEKDLHEQQCPFATVMCQFCELALIRDQMDSHCDTDCP
KAPIACTFSTFGCKERMQRHNLAQHMQEFTQMHMRYMAEFVRCLSLNGTTPKSLRALGPS
VSSEDQGAASASCRGIASCGPCQPSEEMQRIREIDGRLVKQDHQLRELIILEDTRVGQLA
QLQKRVAVLEETVKELEAQQCHGIFIWRLRGFSAHLRNQEAGLPVVEHSPGFYTGQPGYK
LCLRLHLQTPNAPRCSNYISLFVHTMQGAFDGNLSWPFQGTIRLAILDQGPDAQHHMEVM
ETKPDLQAFKKPTIQRNPKGFGYVTFLHLHQLNQRAFVKDDTLLIRCEVTPRFDMFQREG
PPVQPRGPEASRD
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgtctggctctgatagtcataaggggagtttggaggaggtcagttatgagggagctgct
ggtgctgagctgtccagttgtgccttggagatgctgaaaagggaacgagaatccatacac
agcccctcagagagccctggtgcttcaacaattctcccatctgcccttgtgcagggctac
gatgtggagtttgacccaccacttgagagaaaatatgaatgtcctatctgcctcatggct
ctcagaaatgccattcaaacaccatgtgggcaccgtttctgcaagagctgcatcgagaaa
tcgattcaggatacaggacagaggtgcccagtggacaatgaaatgctgctagaagaccaa
ctgtttcctgataattttgccaaaagggagattctttccctcactgtccgctgtccaaat
gcaggctgtactgacaaaatggagctccgacatttagagaatcatttggcacagtgtcca
tttgcaaccatggcctgcccgcagtgccaggagtctgtgagaaaaagctacttggaggag
cacaaaaccatagactgtcgaagaagaccgatgtgctgcccagattgtgttgcaagcttt
gtatatgaggagaaggatcttcatgagcagcagtgtccctttgctactgtcatgtgccag
ttctgtgagctggctctcattagagaccagatggactctcattgtgatacagattgccct
aaagcccctattgcttgtacctttagcacttttggatgtaaggaaaggatgcagcgacac
aatctggctcaacatatgcaggagttcactcagatgcacatgcgctacatggcagagttt
gtgcgctgccttagccttaacggcaccacaccaaagtcactcagggctcttggaccttct
gtttcatctgaggatcaaggagctgcatctgcatcatgcagaggaattgcaagctgtggc
ccatgccagccaagtgaagaaatgcagaggatacgtgaaatagatggacgattagtaaaa
caggatcatcagctccgtgagcttatcatcttagaagatactcgggttggacagcttgca
cagctccaaaaaagagtagctgttctagaggagacagtaaaggaattggaggcacaacaa
tgtcatggtatcttcatctggcgtctcagaggtttctcagcccacctgcggaaccaagaa
gctggcctgccagtggttgagcacagcccaggcttttacacgggccaaccgggctacaaa
ctgtgcctccgcttacacctgcagactcccaatgcccctcgctgttccaactacatctct
ctctttgtccacaccatgcagggagcttttgatggaaacctgagctggcctttccagggc
actatccgccttgccattctagatcagggccctgatgcgcaacatcacatggaggtgatg
gagacgaagccagaccttcaagccttcaagaaacctaccattcagcgcaaccctaaaggt
tttggttatgtaactttcctgcacttgcatcagctgaaccaacgagcttttgtcaaggac
gacaccctcctcatccgctgcgaggtaacaccacgttttgacatgttccaacgtgaggga
cccccagttcagccaagaggccccgaggcttcccgggactaa
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integrated database retrieval system
