Syngnathoides biaculeatus (alligator pipefish): 133509754
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Entry
133509754 CDS
T09681
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
133509754 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sbia03400
]
133509754 (lig4)
Enzymes [BR:
sbia01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
133509754 (lig4)
DNA repair and recombination proteins [BR:
sbia03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
133509754 (lig4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
ATG17_like
Motif
Other DBs
NCBI-GeneID:
133509754
NCBI-ProteinID:
XP_061693076
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All DBs
Position
2:complement(16388500..16396442)
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AA seq
912 aa
AA seq
DB search
MEGTSKGDVPDRPPNVAAQVPFLHLCNTLEKIQKLKLRPEKSKTLGDFIESWRTFHHALH
KDGPKTTDSFYPAMRLIVPSFERERLAYGIKESMLAKLYIDVLCLPKNGPEANKLLNYRT
PTTSPGESGDFAGMAYFVLKKRCSSQGKLTIKEVNDFLDSVATNNASKKKDLVKTSLLHL
ITQSSALEQKWLIRMILKDMKLGISKETVLQVFHPDAGELYNVTTDLDKVCQQLHSPSVS
LSEVSIRLFSAFKPMLAAVANIRNVEKQMGNSSFYIETKLDGERIQLHKDGDVYKYYSRN
AFDYTQQFGGSPLEGSLTPYIHNAFQNHVFNCILDGEMMAYNPSAKTFMQKGSKFDIKRL
MEDSELQTCFCVFDVLLVNSQKLSKETLKKRYEVLQTIFTPVNGRIQMVLKTEARTMQDV
VDSLNDAIDNREEGIMVKDPLSIYKPDKRGEGWLKIKPEYVDGLMDELDVLIVGGYWGKG
RRSGMMSHFLCAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLSKHWKVYRKNDP
PANILCTTEKPEVYIEPCNSVILQVKAAEIVGSDMYKTNCTLRFPRIEKIRDDKEWHQCI
TLAELEEFRSKASGKLASRHLRIDAANEPQRKRQKLPVKSKKVVSIIDHSKPQDLSGVTK
ETDMFEDVEFCILNGTEDHPKAELEKGVAKSGGIVVQNPGRDTYCVIAGLENIRVKNVIS
SNQHDVVWASWLLECLEQKRVVAWQPRHMIHMSPPTREHFAKEYDSYGDSYFLETDEQQL
REVFRRMGPADTSTVVDVSQVEERYGWGDLPTSMFRPFTVYVDDYTDIGDPETPISASCL
DIRALEIRYHGGKVVQKLEEGVSHVVITTETRLADLRRLRRSFQKKFKIVRDSWVTDSVE
AGHLVNDDSYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggaggggacgtcaaaaggtgatgtgcccgatcggccgcctaatgttgctgctcaagtt
cccttccttcacctgtgcaacactttagaaaaaattcagaagttgaaactccgcccagaa
aagtccaaaacccttggggattttattgagtcgtggagaacatttcatcacgccctgcat
aaggatgggcccaaaacgacagactctttctacccagcaatgcgcctcattgttccctca
tttgagcgagagcgactggcctatggcataaaagaaagcatgctagcaaaactttacatt
gatgtgttgtgcctcccaaaaaatggtcccgaagccaacaagctattgaactaccgtaca
ccgaccacgtctccaggagagtctggagactttgccggcatggcctactttgtgctgaag
aaacgctgcagcagtcagggaaagctcaccattaaagaagtcaacgatttccttgattca
gtggctaccaacaatgcaagcaagaagaaagaccttgtgaagacaagcctcctgcacctc
atcacgcagagctctgctcttgagcaaaaatggctcattagaatgattctgaaggacatg
aagctgggcatcagcaaggaaactgttcttcaagtctttcacccggatgctggcgagctc
tacaatgtgaccacggacctggacaaagtgtgccagcagctccacagtccctctgtgtct
ttgagcgaagtttccatcagacttttctctgcgttcaagcccatgttggccgctgtcgct
aacatccgcaatgtggaaaagcagatgggaaacagctctttttacatcgaaaccaagctg
gatggggagcgaatacaactgcacaaagatggcgatgtgtacaagtactacagtcgaaat
gcctttgactacacgcagcagtttggtggctctcctttggagggttcactgacaccatac
atccacaacgcatttcaaaaccacgtcttcaattgcattcttgacggggagatgatggct
tacaacccaagtgcaaagacgtttatgcagaaagggagcaaatttgacattaagagactc
atggaagactcagagttgcagacttgcttctgcgtctttgatgtcctgttagtcaattcc
cagaagcttagcaaagaaacgctaaagaagcgttatgaggtactgcagacaatcttcact
ccggtcaatggcaggattcagatggtgctgaaaacagaggctcgaaccatgcaggatgtg
gtcgattccctcaatgatgccattgacaaccgagaagagggcatcatggtaaaagatccg
ctgtccatctacaaaccggacaagcggggagaaggctggctgaaaataaagccagagtac
gtggacggattgatggatgagctcgatgtcttgatcgttggcggttactggggcaaaggg
aggcggagcggtatgatgtcccatttcctatgcgctgttgcagaagctccgaagcccggc
gagaaaccctcagtattccacacgctctgccgcatcggttctggctacaccatgaaggag
ctgtatgacctcggcttgaagctttccaagcattggaaagtttaccgaaaaaatgaccca
ccggccaacatcctgtgcacaactgagaagcccgaggtctacatcgagccttgcaactca
gtcatcctacaggtgaaggcggccgagatagtcgggagcgacatgtacaaaaccaactgc
accctgcgctttccgaggattgagaagatccgtgatgacaaggagtggcaccagtgcatc
actctcgccgagctggaggagttccgcagtaaggcgtcggggaaacttgcttcgcgccac
ctacgtattgacgctgccaacgagccgcaaagaaaaaggcaaaagctgcctgtcaaatcc
aagaaggtggtcagcatcattgaccattccaaaccccaggatctctccggggttaccaaa
gagacggacatgtttgaggacgtggaattttgcatcctgaatgggacggaggatcacccc
aaagctgagttggagaaaggtgtggccaagtctggcggcattgtcgttcagaacccgggg
cgagatacttactgtgtgatagccggattggagaacatccgcgtgaagaacgtgatttcg
tccaaccagcatgatgttgtgtgggcctcctggctgcttgagtgtctggagcagaaacga
gtggttgcgtggcaaccacgccacatgatccacatgtccccccccaccagggaacacttc
gccaaggaatacgacagctatggtgacagttacttcctggaaactgacgaacagcagctg
cgagaggtgttcaggcgcatgggaccggcagacacctcgacagtcgtcgatgtcagccaa
gttgaagagcggtacggctggggtgaccttcccaccagtatgttcagacctttcacagtc
tatgtggatgattatacggacatcggtgaccctgaaacccccatttctgcaagttgtttg
gatatcagagccctggagattcgttaccacggagggaaagtggtgcagaagttggaggaa
ggggtgtcgcatgtggtcatcacgacagaaacgcgacttgcggatttgaggcgattgagg
cgcagctttcaaaagaagttcaaaatcgtcagggactcatgggtgaccgattcagtggaa
gcagggcatctggtgaatgacgacagctatttagtttga
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