Syngnathoides biaculeatus (alligator pipefish): 133510241
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Entry
133510241 CDS
T09681
Symbol
slit1a
Name
(RefSeq) slit homolog 1a
KO
K06838
slit 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133510241 (slit1a)
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Axon guidance molecules
133510241 (slit1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRCT
LRRNT
LRR_9
LRR_1
hEGF
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
EGF_3
JAG1-like_EGF2
LRR_NXF1-5
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
133510241
NCBI-ProteinID:
XP_061694026
LinkDB
All DBs
Position
12:complement(12241634..12350668)
Genome browser
AA seq
1538 aa
AA seq
DB search
MMATMSGRGMFFGMTKLERCMWGVMLCALLTGSAGACPALCTCSGTTVDCHGLGLRTMPR
NIPRNTERLELNGNNLTRITKSDFAGLKYIRVLQLMENQITVIERGAFDDMKELERLRLN
RNQLQQLPELLFQKNPGLSRLDLSENLIQSIPRKSFRGATDIKNLQLDKNHISCVEDGAF
RALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTIG
LFTQCTAPPELKGLNVAEVQKHEFSCSGHQDSSSPQPCNMGGGSCPAMCTCSNNIVDCRG
KGLTDIPANLPDSMAEIRLEQNGIKEVPAGAFSPYKKLRRIDLSNNQISELAPDAFQGLR
SLNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRADTFQDLQNLSLLSLYDNKI
QTLAKGTFASLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRI
GQIKSKKFRCSAKEQYFIPGAEDARLNNACNSDPVCPPKCRCESSVVDCSNLKLTKIPEH
IPSSTTELRLNNNDITTLEATGVFKSLTQLKKINLSNNKITEVEDGAFEGASSVNELHLT
ANQIDTVRSEMFRGLEGLRMLMLRNNKISCIHNDSFTGLHNVRLLSLYDNQLTTITPGAF
DTLQTLSTLNLLANSFNCDCRLSWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPDF
RCEEGHEDSSCVPRPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSVLP
KELSSFKFLQLVDLSNNKINSLTNTSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLRLL
SLHGNEISELPDGIFGDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGPR
GLEGKLLLTTPAKKFECTGEVDTAVLAKCNPCLSSPCQNQGVCHSDPVDIYRCNCAPGFK
GKNCEITLNACVSNPCANGGRCQVQQELEEDGGQFSCTCPPGFEGAVCQTNIDDCEDNDC
ENGATCVDGVNNYTCFCPPYYTGDMCEEMEDVCAPGRSPCQHQSTCLITSSGPKCVCAPG
YVGDDCSVDYNDCQEHRCQNGARCVDELNGYACRCQQGYSGHLCEIPPSLLSLCELADCQ
NDAPCVERAGRALCQCPPEFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTA
EDNGILLYNGDNDHIAVELYQGHVKVSYDPGSQPGHAIYSAETINDGQFHTVELVTLDQM
VNLSIDGGLPTTMDSFGAVRPLNGEAPLYVGGMPVSVHPGAFRLWQIQNSSSFHGCIQNL
YINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGLQGPVCHCQPGWAGPQCDQLA
GNPCQGSKCVHGRCVPLDTQSYRCECNEGYRGALCNQQGELFNPCRRLSCVHGRCQISDT
GDAYCHCESGYSGELCDAESACRGEPMRDFYQVQRGYAICQTTRTVSWVECGGACEAGTC
CASQRMKRRKYTFECSDGTTFTEEVEKSIKCGCVGCGV
NT seq
4617 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgactatgtcaggcagagggatgttttttggcatgaccaagctggagcgatgc
atgtggggcgtgatgctgtgcgccctactgacgggcagcgccggtgcctgccctgccctg
tgtacctgcagcggaaccacagtcgactgccacggactggggctgcggaccatgcccagg
aatatcccgcgcaacacggaaaggctggagctgaatggtaacaatctcacacgcatcacc
aagagtgacttcgctgggctcaaatacatccgagttctgcagctgatggagaatcagatt
actgtgatcgagcgtggggcttttgatgacatgaaggagcttgagagactgcgcctgaac
cgtaatcaactgcagcagcttcccgagttgctctttcagaagaaccccggcctgtctcga
ttagatctcagcgagaacctcatccagtccattccaagaaaatctttcagaggcgctaca
gacataaaaaaccttcagttggataaaaaccacatcagctgcgttgaggacggcgccttc
agagctttgcgaggcttggaagttctaaccctgaacaacaacaacatcagcagcatcccg
gtttccagcttcaaccacatgcccaaactgcgaaccttccgtctccactccaacaatctc
aactgtgactgtcatctggcctggttggcccagtggctccgacagcggcccaccattggt
ctgttcactcagtgcacggccccgcccgagctcaaaggtctcaatgtggccgaggttcag
aaacacgaattcagctgctcgggtcaccaggattcctccagtccacagccgtgcaacatg
ggcgggggttcttgtcccgctatgtgtacctgcagcaacaacatcgtggactgcagaggg
aaaggtctgactgacatcccagccaacctgccggacagcatggctgaaatacgtctggag
cagaatgggattaaggaagttcctgcaggagccttctctccctacaagaaactacgcagg
atagacctgagcaacaaccagatctcggagttagctcctgacgccttccagggtctgcgc
tccctcaactcgctcgtgctgtatggaaataagatcaccgacctgcctaagggcgtcttt
gatggcctctatgccctgcaactccttttgctgaacgccaacaagattcactgcgtccgt
gccgacaccttccaggacctgcagaacctctcgctgctgtcgctgtacgacaacaagatc
caaaccctggccaagggcaccttcgcttcactgcgggccatacagacgcttcacctggct
cagaatccgttcatttgcgactgcaacttgaagtggttggccgactacctgcgctccaac
cccatcgagaccagcggcgcccgctgcgcgagcccccgtcggctggccaacaaacgcatc
gggcagatcaagagcaagaaattccgctgctccgccaaggagcagtacttcatcccaggt
gccgaggacgcccggctgaataacgcctgcaacagcgatccggtgtgtcctcccaagtgc
cgctgcgagtccagcgtggtggactgctccaacctgaagctcaccaagatccctgagcac
atcccgtcatccaccactgagctgcgcctaaacaacaacgacatcaccactctggaggcc
accggagtgttcaagagccttacccagctcaagaaaatcaaccttagcaacaacaagatc
acagaggtcgaggacggcgcattcgagggggcgtcgtccgtcaacgagcttcacctcacg
gccaatcagatcgacacagtccggagtgagatgttccgtggcctggagggcctccgcatg
ctaatgcttcggaacaacaagatcagttgtatccacaacgacagcttcacgggtctgcac
aacgtgcgtctgctgtctctctacgacaaccagttgaccaccatcactcctggggccttc
gataccctgcagacgctctcaaccctaaaccttctggccaactcattcaactgtgactgc
cggctgtcttggttgggagactggctgaggagcaggaagatcgttacgggcaaccctcgc
tgccagcgcccagccttccttaaggagatccccctgcaggatgtggcgctgcctgatttc
cgttgcgaggaaggccatgaggattcaagctgcgtgcccaggcctcagtgccccagcgag
tgcacttgcctggagactgtggttcgctgtagcaacaagcacctccacacgctgcccaaa
ggaatccccagaaacgtgacagaactgtatctggatggaaaccagttcagcgtgctacca
aaagagctgtcctcctttaagttccttcagctggtggatctgagcaacaacaagatcaac
tctctgaccaacacgtctttcgccaacatgagccagcttaccactctaatcctgagctac
aactccttgcggtgcattcctaaaatggccttcagtggactgcactccctccggctattg
tctctccatggcaacgaaatctccgagcttcccgatggcatcttcggcgacgtggcttcg
ctctcccatttagcaatcggcgccaacccgctgtactgcgactgccgcctgcgctggctg
tccgactgggtcaagaccggatacaaagagcccggtatcgcccggtgtgctggtccacgt
ggcctggagggcaaactgctgctcaccacaccggcaaagaagtttgaatgcacaggtgag
gtggacacggcagtgctggccaagtgtaacccgtgtctgtccagcccatgtcagaaccaa
ggtgtgtgccatagtgacccggtggatatctacaggtgcaactgcgctccagggttcaag
ggcaagaactgcgagataactctgaacgcctgcgtgagcaacccttgtgccaacggaggg
cgatgccaagtgcagcaggagttggaggaggacgggggacagttcagctgcacgtgcccg
ccggggttcgagggcgccgtctgccagaccaacatcgacgactgcgaagacaacgactgc
gaaaacggcgccacttgcgtggacggagtcaacaactacacttgtttttgccccccctac
tacaccggggatatgtgcgaggaaatggaggacgtgtgcgccccaggacgaagcccctgc
caacatcagtctacctgcctcatcacctcctctgggcccaagtgcgtgtgcgctcctggt
tatgtgggtgacgactgcagtgtggactacaacgactgccaggagcatcgctgtcagaat
ggagcccggtgcgtggacgagctgaacgggtacgcgtgccggtgtcagcaagggtacagc
ggtcatctgtgcgagattcctccttcgctgctgtccctctgcgaactggccgactgtcag
aacgacgccccctgcgtggagcgggccggtcgcgccctctgccagtgtcctccggaattc
ggcggcccgcgctgcgagaagctggtcagcgtcaactttgtggacagagactcctacctg
ctgctctccgacctcaagaactggccgcaggccaacatcaccctacaggtatccacggcg
gaggataacggcatcctcttgtacaacggcgacaacgaccacatcgcggtggagctgtac
caaggtcacgtgaaggtcagctacgacccgggcagccagcccggccacgccatctacagc
gccgagaccatcaacgacggccagttccacacggtggagctcgtcacgttggaccagatg
gtgaacctgtccatcgacgggggtctccccactaccatggacagtttcggggcggtgcgc
cccctcaacggggaggctccactatacgtgggggggatgcccgtgagcgtgcacccgggc
gctttccgcctgtggcagatccagaacagctccagtttccacggctgcatccagaacctg
tacatcaacaacgagctgcaggacttcaccaagacgcagatgaagcccggcgtggtgccg
ggctgcgagccctgcaagaagatctactgcgtgcacggcatctgccagcccgacggcctc
caggggcccgtgtgccactgccagccggggtgggccggaccgcagtgcgaccagctcgcc
ggcaacccctgtcaaggcagcaaatgtgtccacggccgctgcgttccgctggacactcag
tcgtaccgctgcgagtgcaacgagggctaccgcggcgcgctgtgcaaccaacagggagag
ctgttcaacccctgccgccggctgtcctgcgtgcacggccgctgccagatctcggacacg
ggagacgcttactgtcactgtgaaagcggctactctggggagctctgtgacgcagagtcg
gcgtgccggggcgagcccatgcgggacttctaccaggtgcagcggggctacgccatctgc
cagacgacgcgcaccgtgtcttgggtggagtgcggcggcgcctgcgaggcgggcacctgc
tgcgccagccagcggatgaagcgccggaaatacaccttcgagtgcagcgacggcaccacc
ttcaccgaggaggtggagaagagcatcaagtgtggctgcgtgggttgcggcgtctaa
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integrated database retrieval system
