Syngnathoides biaculeatus (alligator pipefish): 133513050
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Entry
133513050 CDS
T09681
Name
(RefSeq) thrombospondin-1-like isoform X1
KO
K16857
thrombospondin 1
Organism
sbia
Syngnathoides biaculeatus (alligator pipefish)
Pathway
sbia04115
p53 signaling pathway
sbia04145
Phagosome
sbia04148
Efferocytosis
sbia04350
TGF-beta signaling pathway
sbia04510
Focal adhesion
sbia04512
ECM-receptor interaction
sbia04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sbia00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
133513050
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133513050
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
133513050
04148 Efferocytosis
133513050
09143 Cell growth and death
04115 p53 signaling pathway
133513050
09144 Cellular community - eukaryotes
04510 Focal adhesion
133513050
09142 Cell motility
04820 Cytoskeleton in muscle cells
133513050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sbia04131
]
133513050
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sbia00536
]
133513050
Membrane trafficking [BR:
sbia04131
]
Endocytosis
Phagocytosis
Opsonins
133513050
Glycosaminoglycan binding proteins [BR:
sbia00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133513050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
EGF_CA
TSP1_ADAMTS
EGF
cEGF
Laminin_G_3
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
133513050
NCBI-ProteinID:
XP_061699315
LinkDB
All DBs
Position
15:complement(17149275..17157898)
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AA seq
1173 aa
AA seq
DB search
MMLCGIFLLLMLWSCEGGILAETRDDNSVYDLFDLVRVDKRHNGVTLVKGVDPYSPAYKV
LNADLIPPVPDSSFGDLIDSIQSERGFILLANLKQSRRNRGSLLTIEKKDGSGPVLEIIS
NGKANTLDVFYSTGTHQQLVSIEEAQLATGHWKKITLFFQDDRVQLFVGCEEINVSEMDE
TIQKVLSQEMADMVRLRIGKGATRDKFMGVLQNVRFVFGTSMETVLRNKGCQSGAALTDV
LTLDNPVNGSSPAIRTDYTGHKTKGLQSFCGLSCEDMAGLFNELRGLGVVVKRVTDELRK
VTEVSNEIQAQIKNRSTVCIHNGVVHKDQDEWTVDDCTECTCQNSATVCRKISCPLIPCT
NGTVPEGECCPRCGNPNDSAEDDWSPWSQWTRCSVTCGRGIQQRGRSCDRINSNCEGTSV
QTRDCFPQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPTPQMGGMECQGEG
RQTEICQKSPCPIDGGWGPWSPWDTCTVTCNGGIQTRKRLCSDPVPKYGGKDCVGDSTMS
QVCNKQDCPIDGCLSNPCFSGSKCISFPDGSFKCGRCPLGYKGNGIICKDIDECKEVPDA
CHTHNGVHRCENTEPGYNCQPCPARYSGPQPFGRGVEQATAKKQVCKPRNPCQDGSHNCN
KNANCIYLGVFSESMFRCECKPGYAGNGHICGEDTDLDGWPNSDLLCVANATYHCKKDNC
PNLPNSGQEDHDKDGRGDECDHDDDNDGIPDDRDNCPRVYNPAQYDADRDDVGDSCDNCI
FESNTDQTDTDNNGEGDACAVDIDGDGVLNENDNCPYVYNVDQRDTDRDGVGDHCDNCPL
EHNPDQTDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIANANQADHDKDGKGDACDHDD
DNDGIPDDKDNCRLAFNPDQLDTDGDGRGDVCKDDFDQDNVLDIYDVCPENFAISETDFR
RFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFVNTDR
DDDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLIHRPKSGLIRVVMYEGKRIMADSGNI
YDKTYAGGRLGLYVFSQEMVYFSDLKYECRGKI
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgatgctgtgcggcatcttcctgctgctgatgctttggagttgtgagggtggaatactg
gcagagactcgtgatgacaacagtgtttacgatttattcgatctggtgcgggtggacaag
aggcacaatggggtgactttggtcaaaggggttgacccctacagcccggcgtacaaggtt
ctgaatgcagacctgatccccccggtccccgacagctccttcggggaccttatcgactcc
atccagtctgagaggggtttcatcctcctggccaacctgaagcagtccaggaggaacaga
ggaagcctcctcaccatcgagaagaaagacggctccggtcccgtgttggagatcatctcc
aacggcaaggccaacactttggatgtcttctactccaccggcacccaccagcagctcgtg
tccatcgaggaggctcagttagcgacgggacactggaagaaaatcacgctcttcttccaa
gacgaccgcgtgcaactctttgtgggctgcgaggaaatcaacgtgtccgagatggacgag
accatccagaaagtgttgtcccaggagatggcggacatggtcaggctcaggattgggaag
ggtgcaacaagggacaaatttatgggagtgcttcagaatgtgagatttgtatttgggacg
tccatggagaccgtcctgagaaataaaggatgccaaagtggagctgccttgactgacgtc
ctgactctggacaatccagtgaacggctccagccctgccattaggactgactacaccggc
cacaaaactaaaggtctacagtcgttctgcggcctctcctgcgaggacatggcaggcctg
ttcaacgaactgcgaggactcggcgtagtggtgaagcgcgtgaccgacgagctgcgtaaa
gtgactgaggtcagcaacgagattcaagcgcaaatcaagaaccgcagcaccgtttgcatc
cacaacggagttgtgcacaaagaccaagacgagtggaccgtggacgactgcaccgagtgt
acctgccagaactctgccactgtgtgtcgaaaaatctcctgccctctgattccctgcacc
aatggcaccgtaccagagggagagtgctgcccccgatgtggaaatccaaatgactctgca
gaggacgactggtccccctggtctcagtggacccgctgttcggtgacttgcggtcggggc
atccagcagcgtggacgttcttgcgatcgcatcaacagcaactgtgagggcacctcagtc
caaacacgggactgcttcccccaagaatgtgacaaacgctttaaacaagacggaggttgg
agccattggtctccctggtcttcatgctctgtgacctgtggggacggggtcatcactcgc
atacgcctctgcaactcgccgacaccccagatgggcggaatggaatgccagggagaggga
cggcaaactgaaatctgccaaaagtcgccttgtcccatcgatggaggttggggcccttgg
tcaccatgggacacgtgcactgttacgtgtaatggaggcatccagacccgtaaacgtctc
tgttctgatcctgttccaaaatacggtggaaaggactgtgttggtgacagcaccatgtct
caagtgtgtaacaagcaggactgtcccatcgacggttgcctctccaacccgtgcttctct
ggttcaaagtgtatcagcttccctgatggctcgttcaagtgtggcaggtgtccgctgggc
tacaagggaaacggcatcatctgcaaagacattgatgagtgcaaggaggtccccgatgct
tgccatacacacaatggagtccatcgctgcgagaacacggagcccggttacaattgccag
ccgtgccctgctcgttactctggtcctcagcccttcggaaggggagtggagcaggcgact
gcgaaaaaacaggtttgcaaaccacgtaacccatgccaagatggtagccacaactgcaac
aaaaacgccaactgcatttacttgggcgtcttctccgagtccatgttccgctgtgagtgc
aagccggggtatgccggcaatggccacatctgtggcgaggatactgatctggatggttgg
cccaactctgacctgttgtgtgtggcgaatgcgacctaccattgcaagaaggataactgc
cccaaccttccaaattctggtcaggaagatcacgacaaggatggccgtggtgatgaatgc
gaccacgatgatgacaatgatggtatccctgatgacagggacaactgcccaagagtctac
aaccccgcccagtacgatgcagacagggatgatgttggtgacagctgtgacaactgcatt
ttcgagtcaaacactgaccagactgacactgacaataatggggagggggatgcctgcgct
gtggacattgacggtgatggtgttctgaatgagaatgacaattgcccatatgtttacaac
gtggatcagagggacacagaccgggacggggtgggagaccactgcgataactgccctctc
gagcataaccccgatcagactgactcagactcggatcttgtgggagacaagtgtgacaac
aaccaggacattgatgaggatggccaccagaacaatttggacaactgtccttacatagca
aatgccaaccaggcagaccacgacaaggacggaaagggtgacgcctgcgaccacgatgat
gacaacgacggcattcctgatgacaaggacaattgccggctggcctttaaccccgatcaa
ctggacactgatggtgacggccgaggcgacgtgtgcaaagatgatttcgaccaagacaac
gtcctagatatttatgatgtctgcccagaaaactttgccattagcgaaactgacttccgc
cgattccagatggttccccttgatcccaaaggcacctcccagattgatcccaactgggtg
gtcagacatcagggcaaggagttggtgcagactgtcaactgcgaccctggcattgctgtt
ggttttgatgagttcagcgccgtcgacttcagtggaacattctttgtcaacacagaccga
gatgatgactacgctggttttgtgtttggctaccagtcaagttctcgattctacacagtc
atgtggaagcagatcacgcagacctactggtctcacactcccacgagggctcaagggtac
tcaggtctgtccatcaaagtggtcaactccaccaccggccctggtgagcacctgaggaac
gcactgtggcacactggagacacaccaggacaggttcgtactttgtggcacgaccccaag
aacattggctggaaggacttcaccgcctacagatggcacctgatccatagaccaaagagt
ggacttatcagagtggtgatgtacgagggcaagagaatcatggccgactctggaaacatt
tacgacaaaacctacgctgggggacgactagggttgtacgtcttctctcaggagatggtt
tacttctctgacctgaaatatgaatgtagaggtaagatttaa
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