Sanguibacter biliveldensis: SANBI_001038
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Entry
SANBI_001038 CDS
T10642
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbil Sanguibacter biliveldensis
Pathway
sbil03030
DNA replication
sbil03410
Base excision repair
sbil03420
Nucleotide excision repair
sbil03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SANBI_001038 (ligA)
03410 Base excision repair
SANBI_001038 (ligA)
03420 Nucleotide excision repair
SANBI_001038 (ligA)
03430 Mismatch repair
SANBI_001038 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbil03032
]
SANBI_001038 (ligA)
03400 DNA repair and recombination proteins [BR:
sbil03400
]
SANBI_001038 (ligA)
Enzymes [BR:
sbil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SANBI_001038 (ligA)
DNA replication proteins [BR:
sbil03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SANBI_001038 (ligA)
DNA repair and recombination proteins [BR:
sbil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SANBI_001038 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SANBI_001038 (ligA)
MMR (mismatch excision repair)
DNA ligase
SANBI_001038 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SANBI_001038 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
KOW6_SPT51-2
DUF4245
BRCT_2
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WPF83370
UniProt:
A0AAF0Z635
LinkDB
All DBs
Position
1216829..1219357
Genome browser
AA seq
842 aa
AA seq
DB search
MSTKTPPAAQGPDESATAASPDQSAAQQRWKVLAEEIEAHQFAYYVRDAPTVSDAEYDVL
LREIGQIEETYPQLRTPDSPTQRVGGTFSTDFAAVDHREQMLSLDNAFNAEDLDAWAERV
HREIGTTQVHYLCEVKIDGLAIALLYEKGVLVRAATRGDGRTGEDVTLNVRTIESIPLTL
GGDPSTHPDLIEIRGEVFMLVDQFAALNEAQVAAGKPPFANPRNAAAGSLRQKNPKVTAS
RPLRMYAHGVGALHWEAGAPATLRRQSDAYALFEQWGVPVSSHNRVVEGMPGVQEMIDYY
GDHRHDIEHELDGIVVKVDELALQRQLGATSRAPRWAIAYKYPPEEVNTKLRDILVNVGR
TGRVTPFGVMEPVLVAGSTVSMATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEIVGPVIE
LRDGSEREFVMPTECPSCGTPLAPAKEGDVDIRCPNQRSCPSQLRERVFHLAGRGAFDIE
AMGWEAAIALVDPEHNRPEGADAEGVPVQVPVLETEAGFFDFEVDDLADVLVWREKKKAG
VGTGVWEQIPFFYTRATAKNPSKPSATTVKFFDEREKAKTQPLWRVLVALSIRHVGPTAA
RALATAFESVEAIMDATEEELAATEGVGPTIARAVRIWFNGRASVAAAPEPEASEPDESG
AVRPVDGASDGAVPGDAPELSEDAVPGDSAVPATLPPADEDDDLEVDGSDWHREIIERWR
AAGVQMRDERDESIVRTLEGLTVVVTGSLEGFNRDQVKEAIIARGGKAAGSVSKKTDFVV
VGENAGSKEAKARELGLTILDEAGFVTLLAEGPPAAADPLLDEVGSSVEAAEPETAATDS
ED
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
gtgagcacgaagacaccccccgcagcccagggtcccgacgagtccgcgaccgccgcgagc
cctgaccagagcgcagcccagcagcgctggaaggtgctcgccgaggagatcgaggcgcac
cagttcgcctactacgtgcgcgacgccccgacggtgtcggacgccgagtacgacgtcctg
ctgcgcgagatcggtcagatcgaggagacgtacccgcagctgcgcacccccgactctccg
acccagcgggtgggtgggaccttctcgacggacttcgcggccgtggaccaccgcgagcag
atgctcagcctcgacaacgccttcaacgccgaagacctcgacgcgtgggccgagcgggtg
caccgggagatcggcaccacgcaggtccactacctctgcgaggtgaagatcgacgggctg
gccatcgcgctgctctacgagaagggcgtcctggtccgtgctgccacccgcggtgacggg
cggactggggaggacgtcactctcaacgtccgcacgatcgagagcatcccgctgaccctc
ggcggggacccgtccacgcacccggacctcatcgagatccgcggcgaggtcttcatgctc
gtcgaccagttcgccgctctcaacgaggcgcaggtggccgccggcaagccgcccttcgcc
aacccccgcaacgccgcggcagggtcgctgcgccagaagaacccgaaggtcaccgcgagc
cgcccgctgcgcatgtacgcccacggggtcggcgcgctgcactgggaggcgggtgcgccc
gcgaccctgcgccgccagtccgacgcgtacgccctcttcgagcagtggggtgtgccggtc
tcgagccacaaccgcgtggtcgagggcatgcccggtgtgcaggagatgatcgactactac
ggcgaccaccgccacgacatcgagcacgagctcgacgggatcgtcgtgaaggtcgacgag
ctggccctccagcgccagctcggcgccacgagccgcgcaccgcggtgggccatcgcgtac
aagtacccgcccgaagaggtcaacacgaagctgcgggacatcctcgtcaacgtggggcgg
accggtcgggtgacccccttcggggtgatggagcccgtcctcgtcgccgggtcgacggtg
tccatggcgacgctccacaacggcagcgaggtgaagcgcaagggcgtgctcatcggcgac
accgtcgtgctgcgcaaggctggcgacgtcatccccgagatcgtcgggcctgtcatcgag
ctgcgtgacggttccgagcgcgagttcgtcatgccgaccgagtgcccgtcgtgcgggacc
ccgctcgcccccgcgaaggagggcgacgtcgacatccgttgccccaaccagcggtcctgc
ccgtctcagctccgtgagcgggtcttccacctcgctggccggggtgccttcgacatcgag
gcgatgggctgggaggcggcgatcgccctcgtggaccccgagcacaaccgacccgagggc
gccgacgccgagggcgtcccggtccaggtgccggtcctcgagaccgaggccgggttcttc
gacttcgaggtggacgacctcgccgacgtcctcgtgtggcgcgagaagaagaaggccggc
gtcgggacaggggtgtgggagcagatcccgttcttctacaccagggccaccgccaagaac
ccgtccaagccgtcggcgaccacggtcaagttcttcgacgagcgcgagaaggccaagacg
cagccgttgtggcgcgtcctcgtggccctgtcgatccggcacgtcggcccgaccgccgca
cgcgcgctcgcgacagccttcgagtcggtcgaggcgatcatggacgcgaccgaagaagag
ctcgccgcgaccgagggcgtcggtccgacgatcgcgcgcgccgtccgcatctggttcaac
ggacgggcctcggtcgctgcggcacccgagcccgaggcgtccgagccggatgagtctggc
gcggtcaggccagtcgacggagcatccgacggcgcggtgcccggagatgccccggagctg
tccgaggatgccgtcccgggggactccgcggtccccgcgaccctcccgcccgcggacgag
gacgacgacctcgaggtcgacggctccgactggcaccgcgagatcatcgagcgctggcgt
gcggcaggggtccagatgcgcgacgagcgggacgagtccatcgtccgaacgctcgagggc
ctcaccgtcgtggtgacaggatcgctcgagggcttcaaccgcgaccaggtcaaagaggcg
atcatcgcgcgcggtggcaaggctgcaggctcggtctcgaagaagaccgacttcgtggtg
gtgggggagaacgcgggctcgaaggaggccaaggcgcgtgagctcggcctgacgatcctc
gacgaggccggttttgtcacgctcctcgccgagggaccgccggccgcggcagacccgctc
ctggacgaagtcggttcgtctgtcgaggcagcagagcccgagactgcagcaacggactca
gaagactga
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