Shigella boydii Sb227 (serotype 4): SBO_2656
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Entry
SBO_2656 CDS
T00301
Symbol
ygcF
Name
(GenBank) conserved hypothetical protein
KO
K10026
7-carboxy-7-deazaguanine synthase [EC:
4.3.99.3
]
Organism
sbo
Shigella boydii Sb227 (serotype 4)
Pathway
sbo00790
Folate biosynthesis
sbo01100
Metabolic pathways
Module
sbo_M00988
PreQ1 biosynthesis, GTP => 7-Aminomethyl-7-deazaguanine
Brite
KEGG Orthology (KO) [BR:
sbo00001
]
09100 Metabolism
09108 Metabolism of cofactors and vitamins
00790 Folate biosynthesis
SBO_2656 (ygcF)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sbo03016
]
SBO_2656 (ygcF)
Enzymes [BR:
sbo01000
]
4. Lyases
4.3 Carbon-nitrogen lyases
4.3.99 Other carbon-nitrogen lyases
4.3.99.3 7-carboxy-7-deazaguanine synthase
SBO_2656 (ygcF)
Transfer RNA biogenesis [BR:
sbo03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
SBO_2656 (ygcF)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Radical_SAM
Fer4_12
Motif
Other DBs
NCBI-ProteinID:
ABB67193
ShiBASE_China:
SBO2656
UniProt:
Q31XL5
LinkDB
All DBs
Position
complement(2660021..2660692)
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AA seq
223 aa
AA seq
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MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAK
TKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETS
GTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTD
DKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
NT seq
672 nt
NT seq
+upstream
nt +downstream
nt
atgcagtacccgattaacgagatgttccagaccctgcaaggtgagggttactttaccggc
gtccccgccatttttattcgtttacagggatgcccggttggctgtgcctggtgcgacacc
aaacacacctgggaaaagcttgaggatcgggaagtctcccttttcagcattctggcgaag
accaaagagagtgataagtggggggcggcgagcagtgaagatttgctggctgtcattggt
cggcagggatataccgcgcggcatgtggtgattacgggtggtgagccttgcattcatgat
ttgctgccactgactgacctgctcgaaaagaacggttttagctgccagatcgaaaccagt
ggaactcatgaagtacgctgcacaccgaatacctgggttaccgtatcgccaaagctgaac
atgcgcggcggctatgacgtgttgtcacaggcactggagcgagccaacgaaatcaagcat
ccagtggggcgcgtacgcgatattgaagcactcgatgaactattggcaacgctgaccgat
gataaaccgcgagtcattgcactgcagccgattagccaaaaggatgatgccacacgtttg
tgcattgaaacctgcattgcgcgtaattggcgtttgtcgatgcaaacacataaatatcta
aatattgcctga
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