Fretibacterium fastidiosum: SY1_11460
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Entry
SY1_11460 CDS
T02602
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbr
Fretibacterium fastidiosum
Pathway
sbr03030
DNA replication
sbr03410
Base excision repair
sbr03420
Nucleotide excision repair
sbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SY1_11460
03410 Base excision repair
SY1_11460
03420 Nucleotide excision repair
SY1_11460
03430 Mismatch repair
SY1_11460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbr03032
]
SY1_11460
03400 DNA repair and recombination proteins [BR:
sbr03400
]
SY1_11460
Enzymes [BR:
sbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SY1_11460
DNA replication proteins [BR:
sbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SY1_11460
DNA repair and recombination proteins [BR:
sbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SY1_11460
NER (nucleotide excision repair)
GGR (global genome repair) factors
SY1_11460
MMR (mismatch excision repair)
DNA ligase
SY1_11460
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SY1_11460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
CBL28321
UniProt:
A0AB94IX38
LinkDB
All DBs
Position
complement(1257773..1259824)
Genome browser
AA seq
683 aa
AA seq
DB search
MNDVGGVDRGLERGQDDAARMAELYEELAHHARLYYDEDAPEIPDAEYDALVRELAELER
AHPDRVRPDSPTRRVGGTVLEGFEKVRHERPMLSLDNVFSAGELSSFLERIRGDVPEDDW
TFTCEMKIDGLAVSLLYEDGRFVRGATRGDGRVGEDVTENLRTLRTLPMRLKGAPAGRVE
VRGEVLMTWDRFNALNERREELGEPPFANPRNAAAGTMRQLDSRIVAERGLDAFLYYLVD
APSLGVTRQGDALEWLAERGLPIQPAWRRCASLAEAEAFIVEWQERRFSLPYVTDGAVVK
LDDLTLWDGLGATAHAPRWAVAYKYPPEEARTRILSIDVSVGRTGALTPVANLEPVRLAG
TVVQRAGLHNEDEIRRKDVRVGDVVRVRKAAEIIPEVVAVEKECRTGAERPFEMPERCPA
CGSEAVRLPDEAVLRCPNRASCPAQLKEGLRYFASRAGLDIRGLGERLAEQLIDSGRVKT
LSDVYDLPEEDWASLDRMGEKSARNLMGALEASKDRPLSALIAALGIRFVGRRVAELLAE
RFGSMDALSAASEAEIADVEGVGPVIASSVEAFFRDEANLALVERLRERGLNFSSGDAAG
HEGTELEGKSFVFTGELSSMKRAEAEALVRAHGGSASGSVSSKTSFLVAGAGGGSKRRRA
EELGVPIVSEEDFLRMIGGSAPA
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgtgggcggggttgaccgcggactggagcgcgggcaggacgatgcggcgcgc
atggcggagctctacgaggagctggcgcaccatgcgcgcctctactacgacgaggacgcg
ccggagattcccgacgcggaatacgacgcgctggttcgggagctggcggagctcgagcgc
gcacacccggaccgggtgcggccggattcgccgacgcgccgcgtgggcggcacggtgctg
gaggggttcgagaaggtgcgccacgaacgccccatgctgtccctggacaacgtgttcagc
gccggggagctgtcgtcgttcctggagcgcatccggggggacgtcccggaggacgactgg
accttcacctgcgagatgaagatcgacggcctggccgtctcgctgctctacgaggacggt
cggttcgtccggggggccacgcggggggacggccgcgtcggggaggacgtgacggagaac
ctgcgcaccctgcggaccctccccatgcgcctgaagggcgctccggcggggcgcgtggag
gtgcgcggcgaggtgctgatgacgtgggaccgcttcaatgcgctgaatgagcgtcgagag
gaactgggcgagccacccttcgccaatccgcgaaacgccgccgcgggcacgatgcgccag
ttggactcgcgcatcgtcgcggagcgcggcctggacgccttcctctactacctcgttgac
gccccgtccctcggcgtgacgcgtcagggggacgccctggagtggctggcggagcgcggc
ctgcccatccagccggcgtggcggcgctgcgcgtcgctggccgaggcggaggcgttcatc
gtcgaatggcaggagaggcgcttttccctgccctacgtgacggacggcgccgtggtgaag
ctggacgacctgacgctttgggacggcctgggggccacggcccacgcgccgcgctgggcg
gtggcctacaagtacccgccggaggaggcgcggacgaggatcttgagcatcgacgtctcc
gtgggacgcacgggagccctgacgccggtggccaacctggagccggtgcggctggcgggc
accgtcgtgcagcgcgcgggcctgcacaacgaggacgagattcggcgcaaggacgttcgc
gtgggcgacgtggtgcgcgtccgcaaggcggctgagatcatcccggaggtcgtggccgtg
gagaaggagtgccgcacgggcgcggagcggcccttcgagatgccggagcgctgccccgcc
tgcgggtccgaggcggtgcgcctgccggacgaggcggtgctgcgctgcccgaaccgcgcc
tcctgccccgcgcagctgaaggagggcctgcgctacttcgcctcccgcgcggggctcgac
atacgggggctgggggagcgcctggcggagcagctgatcgacagcggccgggtcaagacg
ctctccgacgtctacgacctgccggaggaggactgggcctcgctggaccgcatgggagag
aagtccgccaggaacctgatgggtgcgctcgaggcctcgaaggaccgtccgctctccgcg
ctcatcgcggcgcttggcatccgcttcgtgggcaggcgcgtggcggagctcctggcggaa
cgtttcggcagcatggacgccctgtcggcggcctcggaggcggagatcgcggacgtcgag
ggcgtggggccggtcatcgcctcatccgtcgaagcgttcttccgcgatgaggcgaacctg
gcgctcgtggagcgcctgagggagcgcgggctgaacttctcctcaggggatgccgccggg
cacgagggcacggagcttgaagggaagtccttcgtcttcacgggagagctctcctccatg
aagcgcgccgaggcggaggcgctggtcagggcccacggcggcagcgcctccggcagcgtc
agctcgaagaccagcttcctcgtggcgggcgcgggcggagggagcaagcggaggcgggcg
gaggagctaggggtccccatcgtcagcgaggaggacttcctccggatgatcgggggcagc
gccccggcttaa
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