Streptomyces broussonetiae: GQF42_30160
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Entry
GQF42_30160 CDS
T07359
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbro
Streptomyces broussonetiae
Pathway
sbro03030
DNA replication
sbro03410
Base excision repair
sbro03420
Nucleotide excision repair
sbro03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GQF42_30160 (ligA)
03410 Base excision repair
GQF42_30160 (ligA)
03420 Nucleotide excision repair
GQF42_30160 (ligA)
03430 Mismatch repair
GQF42_30160 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbro03032
]
GQF42_30160 (ligA)
03400 DNA repair and recombination proteins [BR:
sbro03400
]
GQF42_30160 (ligA)
Enzymes [BR:
sbro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GQF42_30160 (ligA)
DNA replication proteins [BR:
sbro03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GQF42_30160 (ligA)
DNA repair and recombination proteins [BR:
sbro03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GQF42_30160 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GQF42_30160 (ligA)
MMR (mismatch excision repair)
DNA ligase
GQF42_30160 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GQF42_30160 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QHA06994
UniProt:
A0A6I6N699
LinkDB
All DBs
Position
6514937..6517135
Genome browser
AA seq
732 aa
AA seq
DB search
MAGDKQQAETAVPAEAREKHAQLAEQIEEHRFRYYVKDAPVISDAEFDKLLKTLEALEEQ
YPELRTPDSPTQKVAGSYATDFTAVEHRQRMLSLDNTFNDEELAAWADRIARELGDQEYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLHGDEVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFTGMTRLSQAYDLLKTWGLPTSTHNRVVDDLDGVRQFIAHYDGEMRHSVEHEIDGAV
IKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTV
AGSEVEFATLHNQEVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFVMPAQC
PECGTPLRPMKEGDIDLRCPNARTCPAQLRERVSYLAGRECLDIEGFGAVAAAALTRPLE
PTDPPLVDEGDLFDLTVEKLLPIKAYVLDPDSGLPKRDPRTGEEKVATVFANQKGEPKKN
TLALLENIEAAKQRPLARFLNGLSIRHVGPVAAQALAREFRSIDRIEQATEEELATTDGV
GPIIATALKEWFAEEWHREIVRKWKAAGVPLEDVSTGDDEGPRPLEGLTVVVTGTLEKFT
RDGAKDALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLNEDGFGVLLEQGP
DAAAEVALPTEE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcagcaggcggagacggcagtgcccgccgaggcacgggagaagcac
gcgcagctcgctgagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcatcagcgacgccgagttcgacaagctcctcaagactctggaggccctggaggagcag
tacccggagctgcgcaccccggactcgccgacccagaaggtcgcggggtcgtacgccacg
gacttcacggcggtcgagcaccgccagcgcatgctctcgctcgacaacaccttcaacgac
gaggaactggccgcctgggccgaccgcatcgcacgcgaactgggcgaccaggagtaccac
ttcctgtgcgagctgaaggtcgacggcctcgcggtcaacctcacctacgagcacggccgg
ctcacccgcgcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cgtacgatcgccgagatcccggaccgtctgcacggcgacgaggtccccgacctggtggag
atccgcggcgaggtctacttcccgatggagaagttcctcgagctgaacgaacgcctggtc
gcggccggagacaagccgttcgccaacccgcgcaacgccgccgccggttcactgcgccag
aaggacccgcgggtcaccgccacccgcccgctgcacatggtggtccacggcatcggcgcc
ctggagggcttcaccggcatgacccggctctcccaggcgtacgacctgctcaagacctgg
ggcctgcccacctccacgcacaaccgggtggtcgacgacctcgacggcgtacggcagttc
atcgcccactacgacggcgagatgcgccactccgtggagcacgagatcgacggtgcggtc
atcaagctggacgagatccgcctccagggccgcctcggctccaccgcgcgggcaccgcgc
tgggcgatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtcgacatcaag
gtgggcgtcggccgcaccggccgcgtcacaccgtacgcgcaggtcgagccggtcacggtc
gcgggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggc
gtgctcatcggggacacggtcgtcatccgcaaggccggtgacgtcatcccggagatcctc
gggccggtggtcgacctgcgggacggcagcgagcgggagttcgtgatgccggcgcagtgc
cccgagtgcggcacgccgctgcggcccatgaaagagggcgacatcgacctgcgctgcccc
aacgcccgtacctgcccggcccagttgcgcgagcgcgtgtcctacctcgcgggccgcgag
tgcctggacatcgagggcttcggcgcggtggccgccgccgcgctcacccgtccgctggag
ccgaccgacccgccgctggtggacgagggtgacctgttcgacctgacggtggagaagctg
ctgcccatcaaggcctacgtcctcgacccggacagtggtctgcccaagagggaccccagg
acgggcgaggagaaggtcgccacggtcttcgcgaaccagaagggcgagccgaagaagaac
accctcgccctgctggagaacatcgaggcggccaagcagcgcccgctggcgagattcctc
aacggactgtccatccggcacgtcggaccggtggccgcacaggccctcgcccgcgagttc
cgctccatcgaccgcatcgaacaggccaccgaggaggagctggcgaccaccgacggcgtc
ggcccgatcatcgccaccgcgctcaaggaatggttcgccgaggagtggcaccgcgagatc
gtccgtaagtggaaggccgccggggtcccgctcgaggacgtgtcgaccggcgacgacgag
ggtccgcgcccgctggaggggctcaccgtcgtggtcaccggcacgttggagaagttcacc
cgggacggcgccaaggacgcgctgcagagccggggagcgaaggtgaccggatcggtgtcg
aagaagacgtcgttcgtcgttgtgggtgacaatcccggatcaaagtacgacaaggccatg
caattgaaggttccggtcctgaacgaggacggtttcggagtcctcttggagcagggcccg
gacgccgcggccgaagtcgcgcttccgaccgaggagtag
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