Sphaerochaeta globosa: SpiBuddy_2915
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Entry
SpiBuddy_2915 CDS
T01439
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbu
Sphaerochaeta globosa
Pathway
sbu03030
DNA replication
sbu03410
Base excision repair
sbu03420
Nucleotide excision repair
sbu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SpiBuddy_2915
03410 Base excision repair
SpiBuddy_2915
03420 Nucleotide excision repair
SpiBuddy_2915
03430 Mismatch repair
SpiBuddy_2915
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbu03032
]
SpiBuddy_2915
03400 DNA repair and recombination proteins [BR:
sbu03400
]
SpiBuddy_2915
Enzymes [BR:
sbu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SpiBuddy_2915
DNA replication proteins [BR:
sbu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SpiBuddy_2915
DNA repair and recombination proteins [BR:
sbu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SpiBuddy_2915
NER (nucleotide excision repair)
GGR (global genome repair) factors
SpiBuddy_2915
MMR (mismatch excision repair)
DNA ligase
SpiBuddy_2915
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SpiBuddy_2915
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_5
BRCT
PTCB-BRCT
DNA_ligase_ZBD
HHH_2
Nlig-Ia
RNA_ligase
SH3_ISE2
Motif
Other DBs
NCBI-ProteinID:
ADY14723
UniProt:
F0RTM5
LinkDB
All DBs
Position
complement(3157100..3159190)
Genome browser
AA seq
696 aa
AA seq
DB search
MNELEHEIHSLVEQLASYQKAYYVDNRPLVSDLEYDRLFDRLVALETQYPHLKLADSPTQ
RVGSDLDSALVEVAHTIPVLSLDKAYSDGEMLSWIEKTELKIGEEVGIVIEEKIDGISIV
LYYEDGLLKRAVTRGNGMVGNDVTANVKTIASIPLRLPVKESLAVRGEIYLPKETFAKLN
AQMEVPFANPRNLAAGTIRRIKSSEVAKVPLQIFVYEGFWKEVVHTDHLQILSTLASYGF
RLNPNLGYFAKDASQARQALMDAQLSGFGGSFSDLASYIQDHTQKRASLGYEIDGLVAKV
NSLSGREMLGYTGHHPRWAMAYKFESPQAQTVVQAIDVQVGRTGRVTPVARVVPVQVAGS
TISNITLHNQDYINMLELGLGDTVEISRRGDVIPAVERVIEKNESSQGIYHMPTRCPICD
STLESRGAHTFCPNISCPAQIRGRIEFFIGKEGMDIDNFGPETAAALIDLGYLKDIDDIY
RIDYRKALSDQAGFGEKKIRLIEGGVQKSKEQPFRKVLVALGLPELGKKGAELLLANGIT
SMEILLDIANRGDVQRLTSIKQIGEKIARLYIEALCEPAMQQRIARLASLGLAMAEGEQQ
LQKLDDSFSGQVWCVTGSFEHFNPRSLAMDEVVKRGGRTVSSVTSKTTHLLAGEGGGSKL
ETARSLKVQVVDEQTFLTLLKSKQHNEQQSQGEFAF
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaacttgaacacgaaatccactcacttgtcgagcagcttgcctcctatcagaaa
gcctactatgtggacaaccgtccgcttgtcagcgatttggaatacgaccgcctcttcgac
cgtctggttgccttggagacgcaatacccacacctcaagcttgccgattcaccaacccag
cgggtgggaagcgacctcgactcggctctggtggaggtggctcataccatcccggtgctc
agtctggacaaggcgtacagcgatggggaaatgctctcctggattgagaagaccgagctc
aagattggagaagaggtgggaatagtcatcgaggagaaaatcgacggcatctcgatcgtg
ctctattacgaggacggacttctcaagcgtgctgtaacacgcggcaacgggatggtagga
aacgatgtgacggccaacgtaaagaccatcgcctccattcccctcaggcttccggtcaag
gaaagcttggcggttcgcggtgagatctacctgcccaaggagacatttgccaagctgaat
gcccagatggaagtgcccttcgcaaatccacgcaacctggccgcaggaacaattcggagg
atcaagagcagcgaagtggccaaggtgccgctacagattttcgtctatgaggggttttgg
aaagaggtggtgcataccgaccatttgcagattctttcaacacttgcttcctacggcttc
agactgaatccaaaccttggatactttgccaaggatgcaagtcaggcaaggcaagcgctt
atggatgcacagctatcaggttttggcggcagtttttccgaccttgcctcctatatccag
gaccatacccaaaagcgagcctccctcggctatgagatcgatggtctggtggccaaggtg
aactctctttcgggtcgtgaaatgcttgggtataccggtcaccatccccgttgggcaatg
gcttacaagtttgaatcacctcaggcacaaaccgtggtgcaggcaatcgatgtccaggtg
ggccgcacaggaagagtcaccccggttgcccgagtagtgccggtgcaggttgcgggctct
acgatcagcaatatcaccttgcacaaccaggactacatcaacatgctcgaattgggactc
ggggatacagtggaaatttcaaggcgtggggatgtcatccccgccgttgaacgggtcatt
gagaagaacgagtcctcccaaggcatctaccatatgcctactcggtgccctatatgtgac
agcaccttggaaagccgaggtgcccataccttctgtcccaatataagctgtcccgcccag
attcggggccgtattgagtttttcatcggcaaggaggggatggatatcgacaacttcggt
cccgaaaccgccgcagcccttattgatttgggctatctcaaggatatcgatgacatctat
cgcatcgactatcgcaaggccctctcagaccaggctgggttcggtgagaagaaaattcgc
ttgatcgagggtggtgtacagaaaagtaaagagcagccgtttcgcaaggtactggttgcc
ctcggtcttcccgagctgggaaaaaaaggtgcagaattgttgcttgccaatggcatcacc
agcatggagatcctgcttgatatagcaaatcggggtgatgtccagcggcttacctcgatc
aagcagattggggagaagatcgcccgtctgtacatcgaggccctctgcgaacctgctatg
cagcagagaatcgcccgccttgcctccctcggtcttgccatggcggagggtgaacagcag
ctgcagaaactcgacgatagcttttccggtcaggtctggtgtgtaaccggctccttcgag
catttcaatccccgctctcttgccatggatgaggttgtcaaacggggagggaggacagtc
agttctgttaccagcaaaaccactcacctgcttgcaggggaagggggagggagcaagctg
gaaactgctcgttcgctcaaagtccaagtggtcgatgaacagactttcctcacgttgctg
aaatccaaacagcataacgagcagcagagtcaaggagaatttgctttttga
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integrated database retrieval system
