Sphingobacteriaceae bacterium GW460-11-11-14-LB5: CA265_02055
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Entry
CA265_02055 CDS
T05546
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sbx
Sphingobacteriaceae bacterium GW460-11-11-14-LB5
Pathway
sbx03030
DNA replication
sbx03410
Base excision repair
sbx03420
Nucleotide excision repair
sbx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sbx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CA265_02055
03410 Base excision repair
CA265_02055
03420 Nucleotide excision repair
CA265_02055
03430 Mismatch repair
CA265_02055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sbx03032
]
CA265_02055
03400 DNA repair and recombination proteins [BR:
sbx03400
]
CA265_02055
Enzymes [BR:
sbx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CA265_02055
DNA replication proteins [BR:
sbx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CA265_02055
DNA repair and recombination proteins [BR:
sbx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CA265_02055
NER (nucleotide excision repair)
GGR (global genome repair) factors
CA265_02055
MMR (mismatch excision repair)
DNA ligase
CA265_02055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CA265_02055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
HHH_3
RNA_ligase
Dna2
Auto_anti-p27
Nlig-Ia
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
ARS38527
LinkDB
All DBs
Position
complement(519277..521292)
Genome browser
AA seq
671 aa
AA seq
DB search
MSQTAIKQEMDALVAELNQHNYNYYVLAMPTIGDYEFDKKLKHLAELEKANPDFADPNSP
TQRVGGDITKNFITVNHKYPMLSLGNTYNEQDLRDFDERIRKAIGDNFEYVCELKFDGLS
ISLTYENGKLLRAVTRGDGTKGDDVTNNVKTIHTIPHQIKPTVAPEHFEIRGEIFMHKAA
FLRLNAAREELGEIPYANPRNFASGTIKMQDSKEVAKRPLDGFIYFLYTDKNEFKTHWES
LNAVKDWGFHVCEHNRLVANIDAVLEFIHHWENERFKLSYDIDGIVIKVNSYAQQQELGF
TSKSPRWAISYKYKAAEVETVLEKVTYQVGRTGAVTPVANLKPVLLAGTTVKRATLHNAN
EIDRLDLHEGDTVYVEKGGEIIPKIIKVNLDKRLPGSTKVHYLHHCPECGTELIRKEGEA
VHYCPNDEGCPPQIVGKIQHFISRKAMNIDGLGDETIETFYKHGLVNHISDLYTLYQKSD
QLKTLDRFGERSIENMLAGIEKSKEMPFEKVLFGLGIRYVGETVAKKTAAGVKNIDKLAN
ATVEELIAIDEIGQRIAESIVEYFGKSEHLQQVELLKSAGLQFEIEEKIITLDSDRLIGK
TFVISGVFENFSRDELKDMIEANGGKMLSGISGKLNYLVAGDNMGPSKLEKANKLNVPII
SDAELLEMLKS
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcaaactgcaataaaacaagaaatggatgccctggtggccgaattaaaccagcac
aattataattattatgtactggctatgcccaccattggcgattatgagtttgataaaaaa
ttaaagcacctcgccgagctcgaaaaagcgaatcctgattttgccgatcccaattcgcct
acgcagcgtgtgggtggcgatattactaaaaacttcattacggtaaatcacaaatacccg
atgttatcattggggaatacctataacgagcaggatctccgcgattttgacgagcggatc
cgtaaagcaattggtgataattttgaatacgtttgcgaattaaaatttgatggcctatcc
attagccttacctacgaaaatggtaaacttttacgtgcggttacccgtggtgatggcact
aaaggcgatgatgttaccaacaatgtaaaaaccattcacaccatcccgcatcagattaag
ccgaccgttgcacctgaacatttcgaaatccgtggggagatttttatgcacaaagctgca
tttttacgtttaaatgcagcgcgggaagaactgggcgaaatcccttatgccaatccgcgc
aactttgcatcaggtaccataaaaatgcaggatagcaaagaagtcgctaaacgaccttta
gatggttttatttatttcctgtacaccgataaaaatgaattcaaaacccattgggaaagt
ttaaatgctgtaaaagattggggttttcatgtttgcgaacacaatcgcctggttgctaac
attgatgctgtactggaatttatccaccattgggaaaacgaacgttttaaactgagttat
gatattgatggcattgtaatcaaggtaaacagttatgcccaacaacaagaattgggtttt
acctccaaatcgccacgttgggccatctcatataaatacaaagcagccgaggttgaaacc
gttttagaaaaagtaacttatcaggtcggcagaaccggtgccgttacgccggttgccaat
ttaaaacctgtgttattggctggtactacggttaaacgggccacattgcacaacgccaat
gagatagatcgtttagatttacatgaaggtgataccgtttatgtagaaaaagggggtgag
attattccaaaaatcatcaaggtaaatcttgataaacgcttacctggctcaaccaaggta
cattaccttcatcattgcccggagtgcggaaccgaactgatcagaaaagaaggtgaagca
gtacattactgccccaatgatgaaggttgtccgccgcagattgtgggaaaaattcagcat
ttcatttcacgcaaagcgatgaatatcgatggactcggtgatgaaaccatcgaaacattt
tacaaacacggcctggtaaaccatatcagcgatttatataccttgtatcaaaaatctgat
cagttaaaaaccttagaccgtttcggggaacgatcaatcgaaaacatgcttgccgggatt
gaaaaatcgaaggaaatgccctttgaaaaagtactttttgggttaggcatccgatatgtt
ggtgagacggttgcgaaaaaaactgctgctggggtgaagaatatcgacaaacttgctaat
gccacagtagaggaactcatcgcaattgatgagattgggcaacggattgcagagagtatt
gttgagtattttggaaaatctgagcatttacagcaggtagaattattaaaatcggcagga
ttacagtttgaaattgaagaaaagataattacgcttgatagtgataggcttattggaaaa
acattcgtaatttcgggcgtttttgaaaactttagccgcgatgaactgaaagacatgatt
gaagccaatggaggcaagatgctgagcggtatttcaggcaaattgaactacctggttgca
ggcgacaatatgggcccatcaaagctggaaaaagccaataagttaaacgttccgatcatc
agcgacgcagaacttttagaaatgctaaaaagttaa
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integrated database retrieval system
