Shewanella carassii: TUM17387_17180
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Entry
TUM17387_17180 CDS
T07543
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scaa
Shewanella carassii
Pathway
scaa03030
DNA replication
scaa03410
Base excision repair
scaa03420
Nucleotide excision repair
scaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TUM17387_17180 (ligA)
03410 Base excision repair
TUM17387_17180 (ligA)
03420 Nucleotide excision repair
TUM17387_17180 (ligA)
03430 Mismatch repair
TUM17387_17180 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scaa03032
]
TUM17387_17180 (ligA)
03400 DNA repair and recombination proteins [BR:
scaa03400
]
TUM17387_17180 (ligA)
Enzymes [BR:
scaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TUM17387_17180 (ligA)
DNA replication proteins [BR:
scaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TUM17387_17180 (ligA)
DNA repair and recombination proteins [BR:
scaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TUM17387_17180 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TUM17387_17180 (ligA)
MMR (mismatch excision repair)
DNA ligase
TUM17387_17180 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TUM17387_17180 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCV66359
LinkDB
All DBs
Position
1907246..1909252
Genome browser
AA seq
668 aa
AA seq
DB search
MQAIENEIDQLISTINEHNIRYYVDDNPSIPDAEYDRLMQRLKTLEAEHPELQRSDSPSL
RVGGLALAKFEQVTHLKPMLSLDNAFSEEDFAAFHKRVTDRVGEFSYCCEPKLDGLAVSI
LYRDGVLERAATRGDGAVGEDITENVRTIRAVPLKLRGDDYPPLLEVRGEVFMPKAAFEA
LNERNRVKGDKLFVNPRNAAAGSLRQLDSKITASRALAFYAYALGVVEPESFPLADTHLG
QLQQLKTWGLPVSSEIRLAKDLSEVDDYYRDIMARRSALAYEIDGVVFKVNSIEAQQTLG
FVSRAPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVARLKPVFVGGVTVSNATLHNA
DEIARLGVKVGDTVIIRRAGDVIPQVVAVVPEKRPEDAKEIRFPEQCPVCGSQVERLEGE
AVARCTGGLFCEAQRKEAIKHFASRKALDIDGMGDKIVEQLIDKELVESPADLFSLTASA
LTMLERMGLKSATNLVQAIEAAKQTTLAKFLYALGIREVGESTAANLARHFKELDALKQA
SVEQLIEVEDVGAIVAQHVAHFFAQPHNLEVIDKLLAAGVTWPAIEAPSEDEQPLKGQTW
VLTGTLSQMSRTDAKAQLEALGAKVSGSVSKKTDCVVAGEAAGSKLTKANELGVKVLDEA
GLLALLQS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccattgaaaacgaaattgatcagctgataagcaccattaacgagcacaacatt
cgctactatgtggatgacaaccccagcattcccgatgccgaatatgaccgcctgatgcag
cggctcaaaacgctggaggccgagcaccctgagctgcaacgcagcgactcgccaagcctc
agagtcggtgggctggcgctggccaaatttgaacaggtgactcacctcaaacctatgctc
agtctggacaacgccttcagtgaagaagactttgccgccttccataaacgggtgactgac
agagtcggcgagttcagctattgctgcgagcccaagctcgatgggctggctgtcagtatc
ctctatcgcgatggcgtgctggagcgtgccgccacccgtggcgatggtgcggtcggtgaa
gatattaccgaaaacgttcgcaccattcgggcggtgccgctgaaactcaggggggatgac
tatccgccgctgttggaagtgcgcggtgaagtattcatgcccaaggcggccttcgaggcg
ctcaacgagcgtaaccgagtcaagggagacaagctgtttgtcaatccgcgtaatgccgcc
gccggcagtttgcggcagctggactccaagatcactgcctctcgggcactggcgttttac
gcttatgcattgggtgtggttgagccggaatccttcccgctggcggacacccatcttggg
cagttgcagcagcttaaaacctggggattgccggtcagcagtgagatccgccttgccaag
gacctcagcgaagtggatgactactaccgggatattatggcgcgccgcagtgctttggcc
tatgaaatcgatggtgtggtatttaaggtcaacagcatagaagcgcagcagacactggga
tttgtctcccgtgcaccgcgctgggccatcgcctataagtttccggcccaggaagagatg
actctgctcgaaggggtcgactttcaggtaggccgcaccggcgccgtgacaccggttgcc
aggcttaagcctgtgtttgtcggtggggtgacagtttccaacgccactttgcacaacgcc
gacgaaatcgcccgccttggggtgaaagttggcgatactgtgatcattcgccgcgccggt
gatgttatcccacaagtggttgccgtggtgccggaaaaaagacctgaggatgccaaagag
atccgtttcccggagcaatgcccggtttgtggctctcaggtggaacgtcttgagggggaa
gccgtggcccgttgcacaggtggcttgttctgcgaagcgcagcgcaaggaagccatcaaa
cactttgcttcccgcaaggcgctggatatagatggcatgggcgacaagatagtcgagcag
ctgatcgataaggagctggtagagagcccggcggatctgttctcactcacggcttctgcc
ctgactatgctggagcggatggggctcaagtcggccactaatctggtgcaggccatagaa
gcggccaagcaaacaaccctggccaagtttctctacgctttggggatccgtgaggtaggc
gagtctaccgctgccaacctggcacggcacttcaaagagctggatgccctgaagcaggcg
agtgtcgagcagcttatcgaagtggaagatgtcggtgccatagtggctcagcatgtggcg
cacttctttgctcagccccacaaccttgaggtgatagataaactgctggccgccggggtg
acctggccggccatcgaagcgccgtctgaagacgagcaaccgctcaaggggcagacttgg
gtcttgaccggcactctgagccagatgagccgcactgacgccaaggcgcagctggaggcg
ctcggcgccaaagtgtccggcagtgtctccaagaagacagactgcgtagtggccggcgag
gccgctggctccaaattgaccaaggccaatgagcttggggtcaaggtgttggatgaagcc
ggcctgctggcgctgctgcagtcctga
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