Sphingomonas cannabina: LZK98_03425
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Entry
LZK98_03425 CDS
T08607
Name
(GenBank) efflux RND transporter permease subunit
KO
K18138
multidrug efflux pump
Organism
scab
Sphingomonas cannabina
Pathway
scab01501
beta-Lactam resistance
scab01503
Cationic antimicrobial peptide (CAMP) resistance
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
LZK98_03425
01503 Cationic antimicrobial peptide (CAMP) resistance
LZK98_03425
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
scab02000
]
LZK98_03425
01504 Antimicrobial resistance genes [BR:
scab01504
]
LZK98_03425
Transporters [BR:
scab02000
]
Other transporters
Electrochemical potential-driven transporters [TC:
2
]
LZK98_03425
Antimicrobial resistance genes [BR:
scab01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexAB-OprM [MD:
M00718
]
LZK98_03425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ACR_tran
MMPL
SecD_SecF_C
Motif
Other DBs
NCBI-ProteinID:
UIJ46016
LinkDB
All DBs
Position
685231..688389
Genome browser
AA seq
1052 aa
AA seq
DB search
MSFRNISAWSIRNPVPPIVLFLFLTIAGLVSFWRMDVNNDPDIDFPIVWISISQPGAAPS
ELETQITQQVESAVRSLQGIDEINSTVTEGQSQTIVQLDIGMPVDRAVEDVRSAIQQIRG
NLPDGILEPQIGRVDTSSDNDVASFTALAPDMTVEQLSWYIDNTVRKELLSISGMSAVNR
NGGVDREIRVILHPDKLQSYGLTASQVNQQLRQVNLDAAGGKAEISGFEQAVRVLGNAKD
AYTLGQTQIAVGGGRTIRLSDIADVKDLYAEQKSFARFNGNQVISFDIQRAKGASDVTVF
HAAEKKLKELEKTNPKVHFELLFNQSKYAEEQFHTAMEAMVEGAVLAVLVVLLFLRDWRA
TIISALAIPLSAIPSFWFMDLMGFTLNQMTLLALSLVAGVLVDDAIVEIENIVRHMRMGK
SAYQASIDAADEIGIAVLATTMSIVAVFLPVGLMPGISGQFFKNFGLTVVASVLMSLAVA
RMVTPMVAAYFLKAHGHAEHAGGPVMGGYLKLLSWTLRHRWSAVVAGMIALGLTIWLAFS
GVIPMTFQPEQDQDDVTATIEMVPGTSLEQTQAVVTRVANLLRREPAVESVYERAFVGNG
RVIAMLKKKRDEKSTQFERRLAPELLKIPDARVGFRSQFGWGSSGRDLTITLGGEDPKLL
TQTALTLVNQMSGMKQVVAPRIAGDLNRPEIVIRPRLDLAADLGVTTAALSNAIRIATLG
DIDQNSAKFSLSDRQIPIRVALQESARARLSTIKNLPVATENGGSVPLGVVADIGFGAGP
TKIERLNLQRRLIVGADLAQNPATGKPYVSGDVMKQIHALPIMKNLPVGVGELTVGQAKW
QAEMITNFLIALASGVFLVFAVLVLLYRSFMSPLVNMGSLLLAPLGGLIALAIVGEPLSM
PVLIGVLMLFGIVAKNSILLIDFALEEMNKGVDMFTALVDAGHKRAQPIVMTTVAMVAGM
VPTALSLSGDSSWRAPMGTTVIGGLILSTVLTLVIVPASFSLAVGIERWIGPKLGRRLLT
YRPGDDGKPVIEHQPGGRIGHKPGDGEIQPAE
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgagcttccggaacatctcggcctggtcgatccggaaccctgttccgccgatcgtcctc
ttcctgttcctcaccatcgccgggctggtcagcttctggcggatggacgtcaacaacgat
ccggacatcgatttcccgatcgtgtggatctcgatctcgcagccgggtgcggcgccgagc
gagctcgagacgcagatcacgcagcaggtcgaatcggcggtgcgcagccttcagggcatc
gacgagatcaactcgacggtgaccgagggccagtcgcagacgatcgtccagctcgacatc
ggcatgccggtcgaccgcgcggtcgaggacgtgcgcagcgccatccagcagatccgcggc
aacctgcccgacggcatcctggagccgcagatcggccgcgtcgacacgtcgagcgacaat
gacgtcgccagcttcaccgcgctcgcgcccgacatgacggtcgagcaattgagctggtac
atcgacaacacggtgcgcaaggagctgctgtcgatctccggcatgtcggcggtgaaccgc
aacggcggcgtcgaccgcgagatccgggtgattctccaccccgacaagctccagtcctat
ggcctcaccgccagccaggtgaaccagcagcttcgccaggtgaatctcgacgcggcgggc
ggcaaggcggagatttccggcttcgagcaggcggtgcgcgtgctcggcaacgccaaggat
gcctatacgctcggccagacccagatcgcggtgggcggcgggcgcacgatccgcctgtcc
gacatcgccgacgtcaaggacctctacgccgagcagaagagctttgcgcgcttcaacggc
aaccaggtgatctcgttcgacatccagcgcgccaagggcgcgtcggacgtcaccgtgttc
cacgccgccgagaagaagctgaaggagctcgagaagaccaatcccaaggtccatttcgag
ctcctgttcaaccagagcaaatacgccgaggagcagttccacaccgccatggaggcgatg
gtggagggcgcggtgctggcggtgctggtggtgctgctgttcctgcgcgactggcgcgcg
acgatcatctcggcgctggcgatcccgctgtcggcgatcccgagcttctggttcatggac
ctgatgggcttcacgctcaaccagatgaccttgctcgcgctcagcctggtcgcgggcgtg
ctggtcgacgacgcgatcgtcgagatcgagaacatcgtgcgccacatgcgcatgggcaag
tcggcctatcaggcctcgatcgacgccgccgacgagatcggcatcgccgtgctcgccacc
accatgtcgatcgtcgcggtgttcctgccggtcggcctgatgccgggcatctcgggccag
ttcttcaagaatttcggcctcaccgtcgtcgcgtcggtgctgatgagcctggcggtcgcg
cgcatggtgacgccgatggtcgcggcctatttcctcaaggcgcacggccatgccgagcac
gccggcggaccggtgatgggcggctacctcaagctgctcagctggacgctgcgccaccgc
tggtcggcggtggtcgcgggcatgatcgcgctcgggctcaccatctggctcgccttctcg
ggcgtgatcccgatgaccttccagcccgagcaggaccaggacgacgtcaccgcgacgatc
gagatggtgccgggcacctcgctcgagcagacccaggcggtggtgacgcgcgtcgccaac
ctgctgcgccgcgagccggccgtggagagcgtctatgagcgcgccttcgtcggcaacggc
cgcgtgatcgcgatgctcaagaagaagcgcgacgagaagagcacgcagttcgagcgccgg
ctggcgcccgagctgctcaagatccccgatgcgcgcgtcggcttccgctcgcagttcggc
tggggatcgagcggtcgcgacctcaccatcacgctcggcggcgaggatcccaagctcttg
acccagaccgcgctcacgctggtcaaccagatgtcgggcatgaagcaggtggtggcgccg
cgcatcgccggcgacctcaaccggccggagatcgtgatccgcccgcggctcgacctggcg
gccgatctcggcgtgaccacggcggcgctcagcaacgcgatccgcatcgcgacgctcggc
gacatcgaccagaacagcgcgaagttctcgctgtcggatcgccagatcccgatccgcgtg
gcgttgcaggaaagcgcgcgggcgcggctgtcgacgatcaagaacctgccggtggcgacc
gagaacggcggttcggtgccgctcggcgtcgtcgccgacatcggcttcggcgccggcccg
accaagatcgagcgtctcaacctgcagcgccgcctgatcgtgggcgccgacctcgcccag
aacccggcgaccggcaagccctatgtctcgggcgacgtgatgaagcagatccacgcgctg
ccgatcatgaagaacctgccggtgggtgtcggcgagctcaccgtcggccaggccaagtgg
caggcggagatgatcaccaacttcctgatcgcgctggcgtcgggcgtgttcctggtgttc
gcggtgttggtgctgctctaccgcagcttcatgtcgccgctggtcaacatgggctcgctg
ttgctggcgccgttgggcggcctgatcgcgctggcgatcgtcggggagcccttgtcgatg
ccggtgctgatcggcgtgctgatgctgttcggcatcgtcgccaagaactcgatcctgctg
atcgacttcgcgctggaggagatgaacaagggcgtcgacatgttcaccgcgctggtcgac
gccgggcacaagcgcgcccagccgatcgtgatgaccacggtggcaatggtcgccggcatg
gtgccgaccgcgctgtcgctgtccggcgactcgtcgtggcgcgcgccgatgggcacgacg
gtgatcggcggcctgatcctctcgaccgtgctgacgctggtgatcgtgccggcgagcttc
agcctggcagtggggatcgagcgctggatcgggccgaagctcggccgccgcctgctcacc
tatcgtccgggcgacgacggcaagccggtgatcgagcatcagccgggcggacgcatcggg
cacaagcccggcgacggcgagattcagccggcggaatga
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