Sphingomonas cannabina: LZK98_19115
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Entry
LZK98_19115 CDS
T08607
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scab
Sphingomonas cannabina
Pathway
scab03030
DNA replication
scab03410
Base excision repair
scab03420
Nucleotide excision repair
scab03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LZK98_19115 (ligA)
03410 Base excision repair
LZK98_19115 (ligA)
03420 Nucleotide excision repair
LZK98_19115 (ligA)
03430 Mismatch repair
LZK98_19115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scab03032
]
LZK98_19115 (ligA)
03400 DNA repair and recombination proteins [BR:
scab03400
]
LZK98_19115 (ligA)
Enzymes [BR:
scab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LZK98_19115 (ligA)
DNA replication proteins [BR:
scab03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LZK98_19115 (ligA)
DNA repair and recombination proteins [BR:
scab03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LZK98_19115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LZK98_19115 (ligA)
MMR (mismatch excision repair)
DNA ligase
LZK98_19115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LZK98_19115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Zn_Tnp_IS1
Motif
Other DBs
NCBI-ProteinID:
UIJ45129
LinkDB
All DBs
Position
4055261..4057399
Genome browser
AA seq
712 aa
AA seq
DB search
MDALPTTEAEAAAELERLAAEIAHHNRLYHTDDAPEISDGEFDALVRRNAAIEAAFPALV
RADSPSKQVGAAPAGNLAKVPHARPMFSLDNAFDDADVFEFLARIRRFLSLPENAPIALT
AEPKIDGLSCSLRYENRRLVRALTRGDGTIGEDVTPNALTIGDIPRELPADAPDVFEVRG
EVYMAKDDFAALNVRLLAEATKAGDPDKARQFANPRNAAAGSLRQKDAAVTASRPLCFLA
WGWGEASALPADTQAGMVAAIRGWGFPVAAAFKRCDTVEEALAVYRAIEHERADLPFDID
GVVYKVDRLDWQTRLGSVGRAPRWGIAHKFPAQRAETTLERIDIQVGRTGKLTPVARLKP
VTVGGVVVTNATLHNADEIARLGVRPGDRVVLQRAGDVIPQIVENLTRDEPREPWTFPTH
CPQCQSDAVREEGEVDIRCTGGLICPAQRLERLRHFVSRGALDIEGLGEKSLQEFLDLGW
IAEPADIYRLAAHRDELLGREGWKDKSVDNLLAAIEAKRSPDPVRLLFGLGIRHIGSITA
RDLLKRYATFPEIRALADEIIALRDEMAPALGETEQKFHARRDKAIAEHIGVENVGAAVG
HALADFFHEPHNRAVWDDLLGEVSPPPFVLDVRESEVAGKTVVFTGTLETLSRDEAKAQA
ETLGARVSGSVSAKTDLVVAGPGAGSKLKKAAELGIRVVDEAGWAAIVAAAG
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgctccccaccaccgaggccgaggccgccgccgagctcgagcggcttgccgcc
gagatcgcccaccacaaccgcctctaccacaccgacgacgcgccggagatcagcgacggc
gaattcgacgcgctggtccgccgcaatgccgcgatcgaggctgccttccccgcgctcgtc
cgtgccgattcgccgtcgaagcaggtcggcgccgcccccgccggcaacctcgccaaggtg
ccgcacgcgcggccgatgttcagcctcgacaatgccttcgacgacgccgacgtcttcgag
ttcctcgcccgcatccgccgcttcctcagcctaccagagaacgcccccatcgccctcacc
gccgagcccaagatcgacggcctgtcctgctcgctgcgctatgagaaccgccgcctcgtc
cgtgcgctcacccgtggcgacggcaccatcggcgaggacgtgactcccaatgcactgacg
atcggggacatcccccgcgagctccccgccgacgcccccgacgtgttcgaggtgcgcggc
gaggtctatatggcgaaggacgatttcgccgcgctcaacgtccgcctgctcgccgaggcc
accaaggctggcgacccggacaaggcccgccagttcgccaacccgcgcaacgccgccgcc
ggctcgctccgccagaaggacgcggcggtcaccgcctcccgccccttgtgcttcctcgcc
tggggctggggtgaggcgagcgcgctccccgccgatacccaggccggcatggtcgccgcg
atccggggctggggcttccccgtcgccgcggcattcaaacgctgcgacaccgtcgaagag
gcgctcgccgtctaccgcgcgatcgagcacgagcgcgccgaccttcccttcgacatcgac
ggtgtggtctacaaggtcgatcggctcgactggcagacccggctcggcagcgtcggccgc
gcgccgcgctggggcatcgcgcacaaattccccgcccagcgcgccgagaccacactggag
cggatcgacatccaggtcggccgcaccggcaagctcacgcccgtcgcgcgcctgaagccg
gtgacggtcggcggcgtcgtcgtcaccaacgcgacactgcacaacgccgacgagatcgcc
cgcctcggcgtccgccccggcgaccgcgtcgtgctccagcgcgccggcgacgtcatcccg
cagatcgtcgagaacctcactcgcgacgaaccgcgcgagccgtggaccttccccacccac
tgcccgcaatgccaatccgacgcggtgcgcgaggaaggcgaggtcgacatccgctgcacc
ggggggctgatctgcccggcgcagcggctggagcggctgcgccatttcgtcagccgcggc
gcgctcgacatcgaggggctgggtgagaagagtctgcaggaattcctcgatctcggctgg
atcgccgagcccgccgacatctaccgtctcgccgcgcatcgcgacgagctgctcggccgc
gagggctggaaggacaagtcggtcgataatctgctcgccgcgatcgaggcgaagcgcagc
cccgatccggtgcggctgctgttcggcctcggcatccgccacatcggcagcatcactgcg
cgcgacctgctcaagcgctacgccaccttccccgagatccgggcgctggcggacgagatc
atcgcgctccgggacgaaatggcgcccgcgctgggcgagaccgagcagaagttccacgcg
cgccgcgacaaggcgatcgccgagcatatcggcgtcgagaatgtcggcgccgccgtcggc
cacgccctcgccgacttcttccacgagccgcacaaccgcgcggtgtgggacgacctgctc
ggcgaggtgagcccgcccccgttcgtcctcgacgtgcgcgagtcggaggtcgcgggcaag
accgtggtgttcaccggcacgctcgagacgctgagccgcgacgaggccaaggcccaggca
gagaccctgggcgcgcgcgtgtcgggatcggtgtcggcaaagaccgatctggtggtggcg
ggtcccggcgccggctcgaagctcaagaaggctgccgagctaggtatccgcgtggtcgac
gaggccggctgggccgcgatcgtcgccgcggccgggtga
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