KEGG   Streptomyces cadmiisoli: DN051_04720
Entry
DN051_04720       CDS       T07301                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
scad  Streptomyces cadmiisoli
Pathway
scad03030  DNA replication
scad03410  Base excision repair
scad03420  Nucleotide excision repair
scad03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:scad00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DN051_04720
   03410 Base excision repair
    DN051_04720
   03420 Nucleotide excision repair
    DN051_04720
   03430 Mismatch repair
    DN051_04720
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:scad03032]
    DN051_04720
   03400 DNA repair and recombination proteins [BR:scad03400]
    DN051_04720
Enzymes [BR:scad01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     DN051_04720
DNA replication proteins [BR:scad03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     DN051_04720
DNA repair and recombination proteins [BR:scad03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     DN051_04720
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     DN051_04720
   MMR (mismatch excision repair)
    DNA ligase
     DN051_04720
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      DN051_04720
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT PTCB-BRCT Nlig-Ia
Other DBs
NCBI-ProteinID: AWW36034
UniProt: A0A2Z4ITF4
LinkDB
Position
1175344..1177437
AA seq 697 aa
MTGMTTPAAQIVDAAAYAQAVEDAVKASAAYYSGGTSALDDDTYDRLVRGIADWEAAHPD
EVLPDSPSGKVAGGAVEGDVPHTVAMLSLDNVFSAEEFTAWTESLARRVGHEVERYGVEP
KLDGLAVAARYAHGRLTRLITRGDGTAGEDVSHAIGTIEGLPEQLAEPVTVEVRGEVLMT
TAQFEHANEVRTAHGGQPFANPRNAAAGTLRARERAYTVPMTFFGYGLLPLADTEPGLAA
GLGEAAHSDLMARAAALGVNTTATTAVPGITAGTVDEVLVRVKEIAALRPELPFGIDGIV
VKADLAADQRAAGSGSRAPRWAVAYKLPAVEKVTRLLAVEWNVGRTGIIAPRAVLEPVEI
DGSTITYATLHNPADITRRDLRVGDHVMVHRAGDVIPRIEAPVAHLRTGEEQPIAFPETC
PRCGSGIDTSEQRWRCENGRNCHLVASLSYAAGRDQLDIEGLGHTRVVQLVEAGLVADLA
DLFTLTREQLLSLERMGETSTDNLLAALSAARNQPLSRVLCALGVRGTGRSMSRRIARHF
ATMDLLRAADAEAIQQVEGIGTEKAPSIVAELAELAPLIDKLAAAGVNMTEPGATPPTVR
EDADGGAEPADVADGPLAGMTVVVTGAMTGPLEKLSRNQMNELVERAGGRSSSSVSKKTS
LVVAGEGAGSKRAKAESLGVRLATPDEFAVLVAAYVD
NT seq 2094 nt   +upstreamnt  +downstreamnt
atgacgggcatgacaacacctgctgcccagatcgtggatgccgccgcctacgcgcaggcg
gtcgaggacgccgtgaaggcgtccgccgcctactactccggcggtacgtcggcgctggac
gacgacacctacgaccggctggtgcgcggcatagcggactgggaggccgctcatcccgac
gaggtgctgcccgattcgccgagcgggaaggtcgccggcggcgcggtcgagggggacgtc
ccgcacacggtggcgatgctgagtctggacaacgtgttctcggcggaggagttcaccgcg
tggaccgagtcgctggcccggcgcgtcgggcacgaggtcgagcggtacggagtcgaaccg
aagctggacggtctggcggtcgccgcccgttatgcccacgggcgcctgacccggctgatc
acacggggcgacgggacggccggggaggacgtctcgcacgccatcggcaccatcgagggc
ctgcccgagcagcttgccgagccggtcacggtggaggtgcgtggcgaggtgctgatgacc
acggcccagttcgagcacgccaacgaggtgcgcaccgcccacggcggccagccgttcgcc
aacccccgcaacgccgccgcgggcaccctgcgcgccagggaacgcgcctacaccgtgccg
atgaccttcttcggctacggtctgctcccgctggcggacaccgagcccgggctcgccgcc
gggctgggtgaggcggcgcacagcgacctgatggcgcgggccgccgctctgggcgtgaac
accacggccaccaccgctgtgcccgggatcaccgccggcacggtcgacgaggtgctggtg
cgggtgaaggagatcgccgccctgcgcccggagctgccgttcgggatcgacggcatcgtc
gtcaaggccgacctcgccgccgaccagcgcgccgccgggtccggctcacgcgccccccgc
tgggccgtcgcctacaagctgccggccgtcgagaaggtgacgcggctgctggccgtcgaa
tggaatgtgggccgcaccggcatcatcgccccgcgcgccgtgctggaaccggtcgagatc
gacggctccaccatcacctacgcgaccctccacaacccggccgacatcacccgtcgcgat
ctgcgcgtcggcgaccacgtcatggtgcaccgggcgggtgacgtcatcccccgtatcgaa
gcgcccgtcgcccatctgcgtaccggcgaagagcagccgatcgccttccccgagacctgc
ccgcgctgcggatccggcatcgacaccagcgaacagcgctggcgctgtgagaacggccgc
aactgccacctggtcgcctcgctctcctacgccgccggacgcgaccagctcgacatcgag
ggtctcggccacacccgggtcgtgcagctcgtcgaggcgggtctggtcgccgacctcgcc
gacctgttcaccctcacccgggagcagttgctgagcctggagcggatgggtgagaccagc
acggacaacctcctcgccgcgctgtccgcggccaggaaccagccgctgtcccgggtgctg
tgcgcactcggcgtgcgcggcaccggccgctccatgtcgcggcgcatcgcccggcacttc
gccacgatggaccttctgcgggccgccgatgccgaagcgatccagcaggtcgagggcata
ggcaccgagaaggccccgtccatcgtcgccgaactcgccgaactcgccccgctcatcgac
aagctcgccgcggccggagtgaacatgaccgagccgggcgccaccccgcccacagtgcgc
gaggacgcggacggcggcgcggagcccgcggacgtcgccgacggcccgctggccgggatg
acggtggtggtcaccggcgcgatgaccggccccttggagaagctcagccgcaatcagatg
aacgagctcgtcgaacgggccggtggccgctcgtcctccagcgtctccaagaagaccagc
ctggtggtcgccggtgagggcgccggatccaagcgcgccaaggcggagagcctcggagtc
cgtctggccacgccggacgagttcgccgtcctcgtcgcggcctacgtcgactga

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