Streptomyces caniscabiei: IHE65_41650
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Entry
IHE65_41650 CDS
T08931
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scae
Streptomyces caniscabiei
Pathway
scae03030
DNA replication
scae03410
Base excision repair
scae03420
Nucleotide excision repair
scae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IHE65_41650 (ligA)
03410 Base excision repair
IHE65_41650 (ligA)
03420 Nucleotide excision repair
IHE65_41650 (ligA)
03430 Mismatch repair
IHE65_41650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scae03032
]
IHE65_41650 (ligA)
03400 DNA repair and recombination proteins [BR:
scae03400
]
IHE65_41650 (ligA)
Enzymes [BR:
scae01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IHE65_41650 (ligA)
DNA replication proteins [BR:
scae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IHE65_41650 (ligA)
DNA repair and recombination proteins [BR:
scae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IHE65_41650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IHE65_41650 (ligA)
MMR (mismatch excision repair)
DNA ligase
IHE65_41650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IHE65_41650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
BRCT_2
DNA_ligase_ZBD
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WEO29153
LinkDB
All DBs
Position
complement(9472688..9474781)
Genome browser
AA seq
697 aa
AA seq
DB search
MTTSAAVIVDAAAYAQAVEDAVRASAAYYTGGTSALDDDTYDRLVRGIAAWEAEHPDGIL
PDSPTGKVAGGAVEGDVPHTVAMLSLDNVFSGEEFTAWTASLARRIGHDVERFSVEPKLD
GLAVAARYTRGRLTRLITRGDGTAGEDVSHAIGTVEGLPGELAEPVTVEVRGEVLMTTAQ
FEHANEIRTEHGGQPFANPRNAAAGTLRAKDRAYTVPMTFFGYGLLALPGTDAADAARLA
ELAHSDLMARAAELGVNTTADTAVPGVTAASVEEVLARVTEIAALRAELPFGIDGIVVKA
DLAADQQAAGSGSRAPRWAIAYKLPAVEKITRLLEVQWNVGRTGIIAPRGVLEPVEIDGS
TITYATLHNPADITRRDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGDEQPIVFPEVCPRC
GSGIDTGEQRWRCENGRNCHLVASLSYAVGRDQLDVEGLGHTRVVQLVEAGLVTDLADLF
ALTREQLLGLERMGETSTDNLLAALETAKGRPLSRVLCALGVRGTGRSMSRRIARYFATM
ENLRAADAEAIQRVEGIGTEKAPSIVAELAELAPLIDKLVAAGVNMTEPGATPPAPADEN
TADAEEGTEAAGGPLAGMAVVVTGAMTGVLEKLSRNQMNELIERAGGRASSSVSKKTSLV
VAGENAGSKRAKAETLGIRLAGPDEFAALVADFLTAE
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atgacgacatcagctgcagtgatcgtggatgccgccgcctacgcacaggccgtcgaggac
gcggtgcgtgcctcggccgcctactacaccgggggtacgtcggcgctggacgacgacacc
tacgaccggctcgtgcgcggcatcgcggcgtgggaggccgagcatcccgacgggatactg
cccgactcgcccaccggcaaggtcgccggtggcgcggtcgagggggacgtgccgcacacg
gtggcgatgctgagtctggacaacgtgttctcgggcgaggagttcaccgcgtggacggcg
tcgctggcccggcggatcgggcacgacgtggagcggttcagcgtggagcccaagctcgac
gggctcgcggtcgccgcgcgctacacacggggacggctcacgcggttgatcacccggggc
gacgggacggccggggaggacgtctcgcacgccatcggcaccgtcgaggggctgccgggc
gagctggccgagccggtgacggtggaggtgcggggcgaagtcctcatgaccaccgcccag
ttcgagcacgccaacgagatacgcaccgagcacggcgggcagcccttcgcgaacccgcgc
aacgcagcggcgggcaccctgcgcgccaaggaccgtgcctacaccgtgccgatgacgttc
ttcggatacgggctgctggcgctgccgggcacggacgccgccgacgccgcccggctcgcc
gaactggcccacagcgacctgatggcccgcgccgccgagctgggcgtcaacaccaccgcg
gatacggccgtgcccggcgtcaccgccgcttccgtcgaggaggtcctcgcccgggtgacg
gagatcgccgcgctgcgggccgaactgcccttcgggatcgacgggatcgtcgtcaaggcg
gacctggccgccgaccagcaggccgccgggtccggttcccgcgccccgcgctgggcgatc
gcctacaagctgcccgccgtcgagaagatcacccggctgctggaggtgcagtggaacgtc
ggccgcaccggcatcatcgcgccgcgcggcgtactggagcccgtcgagatcgacggctcc
accatcacgtacgccaccctgcacaacccggccgacatcacccgccgcgacctgcggctg
ggcgaccacgtcatggtgcaccgcgccggtgacgtgatcccgcgcgtggaggcgcccgtc
gcccatctgcgcaccggcgacgaacagccgatcgtcttccccgaggtgtgcccgagatgc
ggctccggcatcgacaccggagaacagcgctggcgctgcgagaacggccgcaactgccat
ctggtggcctccctgtcgtacgccgtcgggcgcgaccagctcgacgtggaggggctcggg
cacacccgggtcgtccagctcgtcgaggcgggcctggtgaccgacctcgcggatctcttc
gccctcacccgggagcagctcctcgggctggagcgcatgggggagaccagcaccgacaac
cttctcgccgcgctggagacggccaaggggcggccgttgtcgcgggtgctctgcgcgctg
ggcgtgcggggcaccggacgttccatgtcccgccgtatcgcacggtacttcgccaccatg
gagaacctccgtgccgcggacgccgaggcgatccagcgggtcgagggcatcggtacagag
aaggccccgtcgatcgtggccgagctggccgaactggccccgctcatcgacaagctcgtg
gcggccggggtgaacatgaccgagccgggcgccacgcctcccgcgccggccgacgagaac
accgccgacgccgaggagggcaccgaggcggcgggcgggccgctcgccgggatggccgtg
gtcgtcacgggcgcgatgaccggggtgctggagaagctcagccgcaaccagatgaacgaa
ctcatcgaacgcgccgggggccgcgcctcctccagcgtctccaagaagacgtccctggtc
gtcgcgggggagaacgccggctccaagcgcgccaaggccgagacgctgggcatccgcctg
gccggccccgacgagttcgccgcgctggtggccgacttcctcacagccgaatga
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