Struthio camelus australis (South African ostrich): 104139134
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Entry
104139134 CDS
T08512
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
scam
Struthio camelus australis (South African ostrich)
Brite
KEGG Orthology (KO) [BR:
scam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scam03036
]
104139134 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
scam03400
]
104139134 (SMCHD1)
Chromosome and associated proteins [BR:
scam03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104139134 (SMCHD1)
DNA repair and recombination proteins [BR:
scam03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
104139134 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
104139134
NCBI-ProteinID:
XP_009665452
Ensembl:
ENSSCUG00000005384
LinkDB
All DBs
Position
Unknown
AA seq
2017 aa
AA seq
DB search
MSTQWDNFEITAPLLGIVRRDRDWDGQDSVAEGRKKYNKLRLAFGIASNENFVITTTNRK
EITEDNFSELVQDGVTLYLLQSVDQTLLSATKERIDFLPHYDTLVKSGMYEYYASEGQNP
LPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAVIDNGRGMTSKQLNNWAVY
RLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSQ
DVHELVLSKEDFEKKEKNKEAIYSGYIRNRKPSDSTHITSDDERFLHNLILEERDKESFT
AVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNETNAVVKDVGPFNNIDIQIS
MFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEGEGIVEGIIRYHPFLYDKETY
PDDPCFPSKLNDDDDDDDCFIVEKGARGKRPIFECFWNGRLIPYTTVEDFDWCAPPKKRG
LTPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRIFNGQEQRMKIDREF
ALWLKDCHEKYDKQIKFTVFKGITTRTDLPSKRMQSPWAVYSAIEWDGKTYKTGQLVKTV
KTLPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEMKTIPISKLDRMVSDKAV
KKYIEDEMARLPDKLSVTWPEGDELLPNETKFAGTPIGALRIEILNKKGEAMQKLPGTSH
GGSKKLLVELKVILHSPTGNKEIISHISQHGGKWPYWFKKMENLQKLGNYTLKLQVVLNE
SNADTYAGRPLPSKIFKFTIIEGKPEKFSVGLLELPFRVGVPFNIPLELQDEFGHATQLA
TDVKPILEASGLTLQYEDITTGTNCIIKGVTAKGCVNSYQGKNFNLKVTLPGLKEDTQIC
KIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNITAQPKLIVHCKFLGASNL
PVYAVDCSNAGTNILTGPVIHVQNIKKDQMLRARIEIPSCKDVPPVEKIIKLLPSSHVAR
LQVLSMDGQKAIQIKHQDEINWVAGDVMHNLIFQMYDEGEREIHITPAVAEKIKVNWTPR
INRDNLIQGLLPDVKVPTSVKDVRYCLITYLDDHVSLESAFTVRPLPDEPKHIKCKLKGS
NTLQMGEELQSEIDVMITDQYGNQVQTVTSACVNSLGVSGPGLDKSNLKITWQESTLTMR
VKGIRFKPCLPGSKELCFAWREFSDFLRVNLIAGSPAKVQLLDWPELEKPVAVINGRELQ
KPLVVQLCDQWGNPSPEPNVKISLIRVNNLKIVPSSQQHKTDENGRANLGVISIHAPRGE
HALQLKASYNKSTLDCPIITLNVLPDPEKPVYLNVKYDKSTSFLAGGTFPDFMVSVLSED
KNIIKNINPARISMKMWEGQSSGTRMPIDVTTLSCSKVKDDKEDGFFYFRDKVIPERAGT
YSIQFTFAMDKTNTLSSDQIIVEVVPNDPVRLLPDSLPATPAVSNVRTVTSRTLVKDLHL
HVMDEYNNRTGIDLVGRIIAKIKSPSDDDDTEIPQFHGKVSTIEFPFDRGSAEINLVLAE
NSPGRDSTEYILVFEPDLPALKKPLEPYRLSFMFYNDFKKQQQMATLTRERDQLSQSIGV
YRNWFDTTNQLVTEMKCQAKEAETREIHLKNELKKHQIDLPQTNTLQYVDSLIKQKMTDQ
EGLMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISWHLASDMDCVVTLTTEA
ARCIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGKICFRPVGNPVFARDLLTFPDN
VEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTREGDRIRSNGKFGGLQNK
APPMDKLRGMVFGAPMPKLYSTLSGQIELLQQYRTAVLKLDNVNKDLDSQLRSLNTPEMQ
KKKQELAEQEKNLKLIEQKLGMTPSDKATESLLQPVMLEMCDTPIPPKRMRRETVKKLYS
SEEWISSPTKKQQQQQEQQPLQISPSEFNGTPRKRKA
NT seq
6054 nt
NT seq
+upstream
nt +downstream
nt
atgtccacacagtgggacaacttcgaaatcactgcaccactgcttggcatagtgagaaga
gacagggactgggatggccaagatagtgtggcagagggaaggaagaagtacaacaaatta
agacttgcatttggcatagcttccaatgaaaactttgttattaccacaacaaacaggaaa
gagattacagaagacaacttcagtgaacttgttcaagatggagttactttgtatctgtta
cagtcagttgatcaaacgctactttcagcaacaaaggaacgaattgacttcctgccgcac
tatgatacacttgtcaaaagtggcatgtatgagtattatgccagtgaagggcaaaatcct
ttgccatttgctcttgctgagttgattgacaattctctatcagccacgtcccgaaatact
ggtattcggagcatacagataaaattgttatttgatgactcccaaggaaaaccagcagtt
gctgtgattgataatggaagaggaatgacttctaaacagcttaacaactgggctgtgtat
agattgtcaaagtttacgagacaaggtgacttcgagagtgatcattctggatatgtgcgc
cctttgccagtgcctcgtagtttaaatagtgatatctcttattttggagttggaggcaag
caagcagtgttcttcgttggacagtctgccagaatgataagcaaacctgcagattctcag
gatgttcatgaacttgtgctttctaaagaggactttgaaaagaaggagaaaaacaaagaa
gcaatatatagtggatacattagaaacagaaagccatctgactctactcacatcacaagt
gacgatgaaagatttcttcataatctaatactagaagaaagggataaagagagtttcaca
gcagttgtcattacaggtgtacagccagatcatatgcagtacttgaaaaactattttcat
ctttggacaaggcagctggcacatatctatcactattatatccatgggccaaaaggaaat
gaaactaatgcagtagtgaaagatgtaggccccttcaacaacattgacattcagatttca
atgtttgaaaaaggaaaagtaccaaagattgtcaatcttagggagatcaaagatgacatg
cagacattgtatataaatactgcagcagatagttttgagtttaaggcgcatgtggaagga
gaaggtatagtggaagggatcatccgatatcatcccttcctttacgataaagaaacatat
cctgatgatccatgctttccatcaaaattaaatgatgacgatgatgacgacgactgcttt
atagtagaaaagggtgccagaggaaaaagacctatttttgaatgcttttggaatggaaga
ttaataccgtacacaactgtggaagatttcgactggtgcgctcctccaaagaagagagga
ttgacaccaattgaatgctacaacagaatttctggtgccttatttaccaatgataagttt
caagtcagcacaaacaaactcactttcatggatctggagctgaagttaaaagataagaat
actctgttcacaagaatcttcaatggacaggaacagcgaatgaaaattgatagagaattt
gctttgtggctcaaagactgtcatgagaaatatgacaaacagataaaattcacagtcttt
aaaggaataactacgcgtactgatttgccatccaaaagaatgcagagcccttgggcagtg
tactctgcaatagagtgggatgggaaaacatacaaaactggacagctggtgaaaaccgtt
aagactctcccaatattctatggaagtattgagaaattttttctgtatggagaccatgat
ggggatatatttgctactggaggagaggttcaaatagctttggaacctcaggcattgtac
gctgaaatgaaaactattccaatctcaaaactagacagaatggtgtctgacaaagctgtt
aaaaaatacatagaggatgaaatggcaagacttcctgacaaattgtcggtcacatggcct
gagggggatgagttattaccaaacgaaacgaaatttgctggtacaccaataggagcatta
agaatagaaattttgaataaaaaaggagaagcaatgcaaaaacttcctggtacaagccat
ggaggttcaaagaaacttcttgttgaactcaaggttattttacactcacctactgggaat
aaagaaataatttctcatatcagtcagcatggaggcaaatggccatactggttcaaaaaa
atggaaaatcttcagaaacttgggaactataccttgaagctgcaagtagtattaaatgaa
agtaatgcagacacttatgcaggaaggcctctgccatctaaaatatttaaatttactatc
atagagggcaaaccagagaaattttcagtgggtcttttggagcttccttttcgagttgga
gtaccttttaatattcctttggaattgcaggatgagtttggtcatgcaacacagttggca
actgatgttaaaccaattcttgaagctagtggcttgacattacagtatgaagatataact
acaggaacaaattgcatcattaagggtgtcactgctaaaggctgtgtaaatagttaccag
ggcaagaactttaatctgaaggttactcttcctggtttgaaagaagacacacaaatttgt
aaaattagattgcagcctggtcctccccgtcaattgaaagtaaagccagattctgaaatt
ctaaaaattgaaaatggcacagctttcccctttcaggttgaagtactggatgaatcagga
aatataacagcacagccaaagttgatagttcactgtaagtttttaggtgcttcaaacctt
cctgtgtatgccgtggactgcagtaatgcaggaacaaacattttaactggtccagttata
catgtgcagaatataaagaaagaccagatgctcagagcaaggattgaaatacctagttgt
aaagatgtgccaccagtggaaaagattattaaacttcttcctagcagtcatgttgcaaga
ctgcaggtcttaagtatggatggacaaaaagctattcaaattaagcatcaggatgaaatt
aattgggttgctggagatgtcatgcacaaccttatatttcagatgtatgatgaaggagaa
agggagatacacataactccagctgtggcagaaaaaattaaggttaactggacacccaga
attaacagagacaatttgattcagggattattacctgatgtgaaagtaccaacatcagta
aaagatgtacgttactgtcttattacttatcttgatgaccatgtctctttggagagtgct
tttacagtcagaccacttcctgatgaacccaagcacattaaatgcaaattaaaaggatca
aacacattgcagatgggtgaagaactacagagtgaaattgatgtcatgattacagatcag
tatggaaaccaggttcagacagtgacatccgcttgtgtaaattccctgggagtttctggg
cctggacttgataaatcaaatttgaaaataacttggcaggaaagtacactaacaatgaga
gtcaaaggtattcggtttaaaccgtgtttacctggaagcaaagaattgtgctttgcttgg
cgtgaattttccgattttctcagagtaaatttaattgcaggatcacctgctaaagtgcag
cttttggattggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcag
aagccccttgtagttcaactgtgtgatcagtggggaaatccatctcctgaacctaatgtc
aaaatcagtcttataagggttaacaacttaaagattgttccttcaagccagcaacataaa
accgatgaaaatggtagggctaacctgggagttattagtattcatgcacctaggggagag
cacgccttacagcttaaagcctcatacaacaaaagtacattagattgtcctataatcaca
ttaaatgtcctgcctgacccggagaaacctgtctacttgaatgttaaatatgacaaaagt
acttcttttctggcaggaggtaccttccctgattttatggttagtgttctttctgaagac
aaaaacattattaaaaatattaatccagcacggatttctatgaaaatgtgggaaggacag
agcagcggaactagaatgccgattgatgttacaacacttagctgtagtaaagtgaaggat
gacaaggaagatggcttcttttacttcagggataaagtgattcccgagagagcggggact
tacagtatccagtttacttttgcaatggataagacaaatacgctcagcagtgaccagatt
atagttgaagttgtacctaatgatccagtacgcttgttacctgattctttaccagctact
ccagcagtttccaatgttcgaactgttactagtcgtacactggtcaaggatttacacctc
catgtaatggatgaatacaacaaccgtactggaattgatttagttggcaggataatagca
aaaataaagagtcccagtgatgatgatgatacagagatcccacagtttcatggaaaagtc
agtacaatcgagtttccttttgaccgaggatcagctgaaattaatctagtcctggccgaa
aacagtcctggaagagatagcactgaatatattcttgtatttgagccagatcttccagcc
ttgaaaaaacctttggaaccataccgtctgtcatttatgttttacaatgatttcaagaag
cagcaacagatggcaacacttacaagggagagagaccaactatctcagtccataggcgtt
tacagaaattggtttgatacgactaatcagcttgttactgaaatgaaatgtcaagctaaa
gaagccgaaacaagagaaattcacctgaagaatgaactgaaaaaacatcaaattgattta
ccacagacaaacacacttcagtatgtggattctctcataaaacaaaagatgacagatcaa
gaaggattaatgaagcagccaaggcgaacttgtaccctcccaaattacccaaaaggcaac
caggatattttaggcaagattgcacatttagcacaaattgaggataatgaagcagcaaaa
gttatctcttggcatttggcaagtgacatggactgtgtagttacgctgactactgaagct
gctcgttgtatttttgatgaaactcagggtcgacaacaagtgctaccccttgattctatt
tacaagaagacactccccgactggaacaggcctttgcctcacttaagaaatggaaaaatc
tgcttcagacctgttggaaatcctgtatttgccagagatctgctaacatttccagataac
gtagagcattgtcaaacagtgttcgggatgcttttgggtgacactatcattatagataac
ttggatgctgccaatcattatagaaaagaggttgtaaaaatcacacattgccctacattg
ctgactagggaaggagacaggattcgcagcaatggaaaatttggaggccttcagaataaa
gctcctccaatggacaaactcagaggaatggtatttggagcacccatgccaaaactttac
tctactctctccggacagatagagcttcttcagcaataccgtacagcagtgctgaaactt
gataacgtgaataaagatcttgattcacagctgcggtcacttaacactccagaaatgcaa
aagaaaaaacaggaacttgctgaacaagagaagaacctcaagctgatagaacaaaaactg
ggtatgaccccatcagataaggccactgaatcattacttcagcctgtaatgctagaaatg
tgtgacactcccatccctcccaaaagaatgcgaagagaaacagtaaaaaaattatatagt
tcagaagaatggatctcttctcccacaaagaagcagcaacagcagcaagaacagcagcca
ctgcagatatccccttcagaatttaatggaactccacgaaagagaaaggcatag
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