Serinus canaria (common canary): 103812307
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Entry
103812307 CDS
T05755
Symbol
LIG4
Name
(RefSeq) DNA ligase 4 isoform X1
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
scan
Serinus canaria (common canary)
Pathway
scan03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
103812307 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
scan03400
]
103812307 (LIG4)
Enzymes [BR:
scan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103812307 (LIG4)
DNA repair and recombination proteins [BR:
scan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
103812307 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
Motif
Other DBs
NCBI-GeneID:
103812307
NCBI-ProteinID:
XP_009083592
UniProt:
A0A8C9NS17
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPVSQPPPKKTVASHVPFADLCSTLERIQKSKTRPEKTKYFKDFLDSWRKFHNALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLSLPKDGKDAAKLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTVEQVNEHLDAIANNNAAKNKGQLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMSNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPEAQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDEKLGHEVLSKRYEILSSVFTPVKGRIHVVHKRSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPPPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
GNILCGAEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDEYDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGMGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVVQLK
EVFSRMKDNKAMPLDLIAELEERYWYSSCQLGIFRGSTIYVDCYAVVNEPQSKIPGTTLS
IRALELRFYGAKVVSHLEEGVSHVVVGEDCSRVEEMKALRRTFGKKFKIVSELWVTHSVE
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgtttcacagcctcctcctaaaaaaacggtggcctctcacgtgcct
tttgcagatctctgttctactctggagcgaatacagaagtccaaaactcgtccagagaaa
accaagtatttcaaggattttctggattcctggaggaaattccacaatgcacttcatcaa
aaagagaaagatgtcacagattccttttacccagctatgcggcttattctcccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcaaaactctatattgaa
ctgcttagtttaccaaaagatggaaaagatgctgcaaagcttttaaattacagaacgcct
acaggctcacgaggagatgctggagattttgcaatgatcgcatactttgtgctgaaacct
aggagcccaaaacaaggcagactaacagtagaacaagtcaatgaacatttagatgcaatt
gctaataataatgctgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatattttcaatttttcatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcgctt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaagcaaatgagtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttcaccccttgaaggttcattaactccatttatt
cataacgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgaggcacaaacttttatgcaaaaaggaaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtattgatggttaatgatgag
aagctggggcatgaagtattaagcaaaagatatgaaatcttaagtagtgtatttacccca
gtgaagggcaggatacatgttgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagccatagataacagagaggaaggaattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgagctggaccttttaattgttggtggttactgggggaaggggtct
cgtggtggaatgatgtctcattttctatgtgctgttgcagagacgccccctccaaatgaa
aagccgactgttttccactccatttgtcgtgttggctctggctatactatgaaagagttg
tatgatctaggcttgaaactggctaaacactggaagccctaccataggaaggaccctcct
ggtaacattttgtgtggagctgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtataaaactgactgtact
ttgagattcccccgaattgagaagataagggaagacaaagaatggtatgagtgcatgacc
tcagacatgctggaagacctcagaagcaaagcacaaggaaagctggcatctaagcacctt
catatagatgagtatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcaatttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagatgttgagttttgtgttatgacaggaatgggaaaatactcaaaa
tcagagctggaaagcagaatagcccagtgtggtggcagtgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacatcattgcttcc
aacaaatacgatgtcgtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccttggcaaccggcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagctacacagcaaacacagatgttgtgcagctcaag
gaagtgttctcaagaatgaaggacaataaggcaatgcctctggacttgattgcagagcta
gaagagcgttattggtatagcagctgtcagctcggtatattcagaggaagcactatttat
gtggactgttatgctgttgttaatgagccccaaagcaaaatccctggaactacactttca
attagagctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtgggagaagattgttcacgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatccgagctgtgggtaacccactcagtggag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
