Serinus canaria (common canary): 103826891
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Entry
103826891 CDS
T05755
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
scan
Serinus canaria (common canary)
Brite
KEGG Orthology (KO) [BR:
scan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
scan03036
]
103826891 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
scan03400
]
103826891 (SMCHD1)
Chromosome and associated proteins [BR:
scan03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
103826891 (SMCHD1)
DNA repair and recombination proteins [BR:
scan03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
103826891 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
103826891
NCBI-ProteinID:
XP_009100604
LinkDB
All DBs
Position
Unknown
AA seq
2030 aa
AA seq
DB search
MAAAAGGGRAPRRPVLLTPRGNGDRTVFLFDRRREQADPDEKVLSYGKDNYRAFRSAVCQ
AFGIPSDETFVITTTNRKEITEDNFSELVHDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIEIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTGFIRNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNEA
NAVTKEISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFLVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRTDVLSKRMQSPWTMYAA
IEWDGKTYKTGQLVKTTKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHATRLTNRIRPILEASGLTLKHEDIPVAANCVIKGVTAKGCVNSCQGKN
FNLKITLPGLKEDTQIIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQILKARFEVLNCKDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQVKHRDEITCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDSRYCLITYLDEHVSLESAFIV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKVTWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLVAGSPAKLQLVD
WPELDKSVAVINGRELQRPLIVQLCDQWGNPTPEPNVKINLTKSNNLKLVPSNQQHKTDD
TGRANLGVFSIHAPRGEHILQIKASYNKAILECLVITINVLPDPEKPICLNVKYDKSPSF
PAGGTFPDFMVSVLSEDDSIIKNINPARISMKMWEAQSSRVRTPVDVTTFSCSKVKDDKE
DGFFYFRDKVVPERVGTYVIQFTFAMDKTNMLNSEQIIIEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIAKIKSPSEEDIEIPQFQGKVNTVE
FPLENGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKKPLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAETREALLRNELKKHQIELPQTN
TLQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGSQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWSRPLPHLRNGRTFFRP
IGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTISGQIDLLQQYRAAVIKFDNVN
KDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALSDKGSESLLQPIMFDISD
TPIPPKRMRRDTVKKLYSSEEWISSPPKQQQQVLQMAPSELNGTPRKRKA
NT seq
6093 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggcgggaggcggccgcgcacctcgcaggccggtgctgctgacccctcgc
ggcaacggggaccgcaccgtgttcctcttcgaccggcgccgggagcaggcggacccggac
gagaaagtgctcagctacggcaaggacaactaccgcgctttccgcagcgccgtctgccag
gcatttggcataccttctgatgaaacctttgttatcaccacaacaaataggaaggaaatt
acagaagataacttcagtgagcttgttcatgatggagttactttatatctgctacagtca
gttgatcaaatgttgcttttggcaaccaaggagcgaattgactttctgccccactatgac
acacttgtcaaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgaattgattgacaattctctctcagctacctctcaaaatactggcatt
cgaagtatagagataaaattgttgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacatctaaacagcttaacaactgggctgtatatagattg
tcaaagtttacaagacaaggtgactttgaaagtgatcactcaggatatgtacgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagct
gtgttcttcgtgggacagtctgccagaatgataagcaaacctgcagcatctcaggatgtt
catgaacttgtcctttctaaggaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcgaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaagct
aatgctgtaacaaaagagataagccctttcaacaacattgatattcagatttcaatgttt
gaaaagggaaaagtaccaaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaacactgcagcagatagttttgaattcaaggcacatgttgaagaagaaggt
atagttgaaggcatcatccgataccatcccttcctttatgataaagaaacataccctgat
gatccatgttttccatcaagattaaatgatgatgatgacgatgactgttttttagtagaa
aaaggggccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaatacca
tacacaactgtggaagattttgactggtgtgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggacctggagctgaagctaaaggataagaatactctgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagggaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actgtacgtactgatgtattatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacatacaaaactggacagctggtgaaaactactaagactcat
ccaatattttatggaagcattgagaaattttatttgtatggggaccatgatggggatata
tttgccactggtggagaggttcaaattgctttggaaccacaggcactgtatgctgaaaca
aaaataattccaatctcaaaacttgacagaacagtgtctgacaaagtcgttaaaaaatac
atagaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacacgatttgctggtacaccaataggagcattaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgagctcaaagttattttgcattcacctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggtaactactccttgaaactgcaagtagtgttgaatgaaagtaatgca
gacacttatgcgggaaggcctctgccatctaaagtatttaagtttactattgtagagggc
aaacctgagaaatttttggtgggtctcttggagcttccttttcgaattggagtacctttt
agtattcctttggaattgcaggatgaatttggtcatgcaacacgcttgacgaatcgcatt
agaccaattctggaagctagtggattaacactgaagcatgaagacatacctgtagcagca
aattgtgtcattaagggtgttactgctaaaggctgtgtaaatagttgccaaggcaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacgcaaatcattaaaataaga
ttgcagcctggccctcctcgtcaattgaaagtaaaaccagattcagaaattctaaagatt
gaaaatggtacagcttttccctttcaggttgaagtactagatgaatcaggaaatataaca
gcacagccagagttgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggcccagttatacatgtacag
aatatcaagaaagaccagatattgaaagcaaggtttgaagtacttaattgtaaagatgtg
ccaccagtggaaaagattataaaacttcttcccagcagtcacgttgcacgactacaagtc
ttaagtatgaacggacaaaaagctcttcaggttaaacatcgggatgaaatcacttgtgtt
gctggccaagtcatgaataaacttatatttcaaatgtatgatgaagcagagagggaaata
cctataactgcagctgctgcagaaaaaatcaaggtcaactggacacctaaaattgacaga
gagctgttgatgcagggattattacctgatgtaaaagtacctacttcagtaaaagattcg
cgttactgtctaattacttaccttgatgagcacgtgtctttggaaagtgcattcatagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacacactg
cagatgggcgaagaactgcagagtgaaatcgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatttgaaagtaacttggcaggaaagtactcaaacgatgaaagtaaaaggt
attcgatacaaaccctgtttacttggcagcaaagaattgtgctttgcttggcgtgaattt
tctgactttatcagagtgaatttagtagcaggatccccagctaaattgcagcttgtggat
tggccagagttagacaagtctgttgcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgatcagtggggaaatccaactcctgaacctaatgtcaaaatcaac
cttacaaagagtaacaacttaaagcttgttccttcaaaccagcaacataaaacagatgac
actggtagggctaacttgggtgtttttagtattcacgcaccgaggggagagcacatttta
cagattaaagcctcatacaacaaggccatattagagtgtcttgtaatcacaataaatgtc
ctgcctgatcctgagaaaccaatctgcctaaatgttaaatatgacaaaagtccttctttt
ccagcaggaggtacttttcctgattttatggttagtgttctttctgaagatgacagcatt
attaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
gttaggacaccagttgatgttacaacgtttagctgtagtaaggtgaaggatgacaaggaa
gatggcttcttctacttcagggataaagtggttccggagagggtgggcacttatgtgatc
cagtttacctttgcaatggataagacaaacatgctcaacagtgaacagattataattgaa
gttgtacctaatgaccccgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgtgctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggacttgatctagttggcagaataatagcaaaaattaaa
agccccagtgaagaagatattgagatcccgcagtttcaggggaaagtcaatacagtggag
tttccattggagaatggatcagctgaaattaatttagtgttggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacatctgccagctttgaaaaaacct
ttggaaccatattgtctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacactgaccagggagaaagaccaattatctaagtccatagatctttacagaaagatg
tttgatactacgaatcagctcgtagctgaaatgaaatgtcaggttaaagaagctgaaaca
cgagaagctctcctgaggaatgaactgaaaaagcaccaaattgaattaccacagacaaac
acacttcagtatgtggattctcttctgaaaaaaaagatgttggaacaagaaggagtaatg
aagcagccaaggagaacttgtaccctcccaaactatccaaaaggcagccaggatattcta
ggcaagattgcacatttagctcagattgaggataatgaagcagccaaagtcatctcttgg
cacctggcaagtgacatggactgtgtagtcacactgaccacagaagctgctcgttctatc
ttcgatgaaactcaaggtcgacaacaagtgttaccccttgattctatttacaagaagaca
cttccagattggagcagacctttacctcacttgagaaatggaagaaccttcttcagacct
attggaaatcctgtatttgccagagatctgttaacatttccagataacatagagcattgt
caaacagtgtttggtatgctcttgggtgatactatcattatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgccaaaactttactcgactatctct
ggacagatagatcttcttcagcaataccgtgcagcagtgattaaatttgataatgtgaat
aaagacttggatctacatttgcagtcactaaacactccagaaatgcaaaagaaaaaacag
gaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaagttgggtatgactcct
gctttatcagataaaggttctgaatcattacttcagcctataatgttcgatatatcagac
acccctattcctcccaaaagaatgagaagagacacagtgaaaaaattgtatagctcagaa
gaatggatctcctctcctccaaagcagcaacagcaagtgctgcaaatggccccttcagaa
cttaatggaactccacggaaaagaaaggcatag
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integrated database retrieval system
