Streptomyces castrisilvae: P8A18_24650
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Entry
P8A18_24650 CDS
T10534
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
scat Streptomyces castrisilvae
Pathway
scat03030
DNA replication
scat03410
Base excision repair
scat03420
Nucleotide excision repair
scat03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
scat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8A18_24650 (ligA)
03410 Base excision repair
P8A18_24650 (ligA)
03420 Nucleotide excision repair
P8A18_24650 (ligA)
03430 Mismatch repair
P8A18_24650 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
scat03032
]
P8A18_24650 (ligA)
03400 DNA repair and recombination proteins [BR:
scat03400
]
P8A18_24650 (ligA)
Enzymes [BR:
scat01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8A18_24650 (ligA)
DNA replication proteins [BR:
scat03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8A18_24650 (ligA)
DNA repair and recombination proteins [BR:
scat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8A18_24650 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8A18_24650 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8A18_24650 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8A18_24650 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
zf-IS66
DUF7575
Motif
Other DBs
NCBI-ProteinID:
WLQ36423
LinkDB
All DBs
Position
5634963..5637191
Genome browser
AA seq
742 aa
AA seq
DB search
MAGEEQTAVPVEARDRHDLLAEQIEEHRFRYYVNDQPVVSDAEFDRLMRELEGLEEAHPS
LRSPDSPTQKVAGPYRTQFTSVEHREPMLSLDNAFDDEELSAWGERVARDVGRPGYHFLC
ELKIDGLAVNLTYENGVLTRAATRGDGRTGEDITPNVRTIADIPHRLKGDRIPPLVEIRG
EVFFPMEGFEELNARLVEADDKPFANPRNAAAGSLRQKDPKVTATRPLHMVVHGIGAREG
FDIDCLSHAYELLREWGLPTAKYNKVVDSLAGVREFIAYFGEHRHSVEHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVVVAGSEV
EFATLHNQNVVRAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGTEQAFVMPTHCPECGK
ELKPMKEADVDVRCPNARSCPAQLRERVSYLAGRKCLDIDHFGYVVAAALTRPLEPAEPP
LRDEGDLFGLTVEELLPIRAYVLDQDSGLPKRDPKTGEEKTALVFANQQGEPKKNALAML
DAIAAAKQAPLARVLTGLSIRHVGPVAARELARQFRSIDRIEEATEQELADADGVGPIIA
ASVKQWFAEDWHREILRKWREAGVRMEDEGAGEDEGPRPLEGLTVVVTGTLTGHTRDGAK
EALQSRGAKVTGSVSKKTAFVVVGDNPGSKYDKAVQLKVPVLDETGFAVLLDQGPDAARE
AAVPAEGRAAEPAPEEDAAPGE
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgaagagcagacagcggtgccagtggaggcgcgggatcggcacgatctcctc
gcggaacagatcgaggagcaccgcttccggtattacgtgaacgaccagccggtcgtcagc
gacgccgagttcgaccggctgatgcgcgagctggagggactggaggaggcccacccctcg
ctgcgctcgcccgactcgccgacccagaaggtcgccggcccctaccgcacgcagttcacc
tccgtcgagcaccgcgagccgatgctctccctggacaacgccttcgacgacgaggagctg
tccgcctggggcgagcgcgtcgcccgtgacgtgggccgccccggctaccacttcctgtgc
gagctgaagatcgacggcctcgccgtcaacctcacctacgagaacggcgtgctgacgcgg
gcggcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtccgcaccatc
gccgacatcccgcaccggctgaagggcgaccggatcccgccgctggtcgagatccgcggc
gaggtcttcttcccgatggaagggttcgaggagctgaacgcccggctggtcgaggccgac
gacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgccagaaggacccc
aaggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctctcgcacgcctacgagctgctgcgcgagtggggcctgcccacc
gccaagtacaacaaggtggtcgactccctcgccggcgtacgggagttcatcgcgtacttc
ggcgagcaccggcactccgtggaacacgagatcgacggcgtcgtcgtcaagctggacgag
atcccgctccagggccggctgggctccacctcgcgcgccccgcgctgggccatcgcctgg
aagtacgccccggaggaggtcaacaccaagctggtcaacatccgcgtcggcgtcggccgc
accggccgcgtcaccccgtacgcccaggtcgagccggtcgtggtggccggctccgaggtc
gagttcgccaccctccacaaccagaacgtggtccgcgccaagggcgtgctcatcggcgac
acggtggtgctccgcaaggccggtgacgtcatcccggagatcctcgggcccgtcgtcgac
ctccgcgacggcacggagcaggcgttcgtcatgccgacccactgccccgagtgcgggaag
gagctgaagcccatgaaggaggcggacgtcgacgtccgctgccccaacgcccgctcctgc
ccggcccagctgcgcgagcgcgtctcctacctcgccggccgcaagtgcctggacatcgac
cacttcggatacgtggtcgccgcggccctcacccggccgctggagcccgccgagccgccg
ctgcgcgacgagggggacctcttcgggctgaccgtggaggagctgctgccgatccgggcc
tacgtcctcgaccaggacagcgggctgcccaagcgcgacccgaagaccggcgaggagaag
acggccctggtcttcgccaaccagcagggcgagcccaagaagaacgccctcgccatgctg
gacgccatcgccgccgccaagcaggccccgctggcccgcgtcctcaccgggctctccatc
cgccacgtcggcccggtcgccgcccgtgagctggcccgtcagttccggtccatcgaccgc
atcgaggaggccaccgagcaggagctcgccgacgcggacggggtcgggccgatcatcgcc
gcctcggtcaagcagtggttcgccgaggactggcaccgcgagatcctgcgcaagtggcgc
gaggccggagtccggatggaggacgagggggccggcgaggacgaggggccccggccgctc
gaagggctcaccgtcgtcgtcacgggcacattgaccggccacaccagggacggcgcgaaa
gaggccctccagagccggggcgcgaaggtcaccggttccgtctcgaagaagaccgccttc
gtcgtggtcggcgacaaccccggctccaagtacgacaaggcggtgcagctgaaggtcccc
gtgctggacgagaccggcttcgccgtgctgctcgaccagggcccggacgcggcccgcgag
gcagcggtcccggccgagggccgggccgcggagcccgcgccggaggaggacgccgcaccc
ggagagtga
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