Scyliorhinus canicula (smaller spotted catshark): 119953255
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Entry
119953255 CDS
T11175
Symbol
traf3
Name
(RefSeq) TNF receptor-associated factor 3 isoform X1
KO
K03174
TNF receptor-associated factor 3
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04620
Toll-like receptor signaling pathway
scau04621
NOD-like receptor signaling pathway
scau04622
RIG-I-like receptor signaling pathway
scau05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
119953255 (traf3)
04621 NOD-like receptor signaling pathway
119953255 (traf3)
04622 RIG-I-like receptor signaling pathway
119953255 (traf3)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
119953255 (traf3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF3_RING
zf-TRAF_2
Sina_ZnF
zf-C3HC4_2
zf-C3HC4
CCDC170_1st
CEP135_TSGA10_CC
zf-RING_5
T4SS_LegC2C7
zf-RING_6
Rod_CreS
CCDC18_2nd
CEP164_CC
TPR_MLP1_2
Motif
Other DBs
NCBI-GeneID:
119953255
NCBI-ProteinID:
XP_038633242
LinkDB
All DBs
Position
2:46373490..46455086
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AA seq
578 aa
AA seq
DB search
MATARNIESSAPLLSLESLMQQANVSHLPNSKLSSLSIEPEDGGYVERFVLKLENKYKCE
HCHLALCNPKQTACGHRFCESCVRKILGGPKPVCPVDDEPLFGNMVFKDMCCKKEVLALQ
IYCRNELNGCKKQLPLGKLEGHLLECPYQEVRCARRGCTEMVQRKDLADHLNSSCKYREQ
TCKYCRNEITIAELKKHEDFDCPSFPVPCPNKCNAYILRGELKSHQLQCLNVVTLCPFSK
YGCTFQGTNQELKVHEAETMAQHLNCVLMKNGDLEETIFELQNKLQEKSKTIDIMATQIS
HLEKEQSKLGQLANKNESRLGHMQRMLASHTDKLMNIDQASQQTCQKQEESVREVKTLEE
SVNQLQIQVRQLELSGRTGGTGTGTASLTALDNQVKRHDNLLSVHDVRLADMDLRFQVLE
TASYNGKLIWKIRDYTRRKQEAVSGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTH
LSLFFVVMRGEYDALLPWPFKQKVTLMLLDQAPASRHLGDAFKPDPNSSSFKKPVSDMNI
ASGCPLFVTQTVLESGTYIKDDTIFIKVVVDTSDLPDP
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcaagaaacatagagtcatcagccccactgctttccctggaatccctgatg
cagcaggcaaatgtgtctcaccttccaaatagcaagctgtcatccctaagcattgaacca
gaggatgggggttacgtggaaaggtttgtgctgaaacttgaaaacaagtacaagtgtgaa
cattgtcaccttgccctctgcaaccccaaacagactgcgtgtggccacagattctgtgaa
agctgtgtgaggaaaattcttgggggtccaaaaccggtttgcccagtagatgatgagcct
ttatttgggaatatggtttttaaggacatgtgctgtaaaaaggaggttcttgcacttcaa
atctactgtaggaatgagctaaatggctgcaagaaacagctccctctcggaaagctcgag
ggccacttacttgaatgtccttatcaggaagtccggtgtgcacgcagggggtgcacggaa
atggtgcaaaggaaagatttagctgaccatttaaattcaagctgtaaatatcgggagcaa
acctgcaaatattgcaggaatgaaatcactattgcggagttaaaaaaacatgaagatttt
gactgtccgtcattccctgtgccatgcccaaataaatgcaatgcttatattctgagggga
gagttgaaaagtcaccagttgcagtgtctcaatgtggtcacgctttgccccttctccaag
tatggatgtaccttccaaggaaccaatcaagaacttaaagtgcacgaagctgaaactatg
gctcaacatttgaactgtgtgttgatgaagaacggagatctggaagaaacgattttcgag
cttcagaacaaattgcaggaaaagtctaaaacgattgatattatggcaactcagataagc
cacttggagaaagagcaaagtaaattaggacagcttgcaaataagaatgaaagtcgactc
ggacacatgcagagaatgttagctagtcacaccgataaattgatgaacattgatcaggca
tcacaacagacatgtcagaagcaggaggaatccgtgagagaggtgaaaactttggaagaa
tctgtaaaccagcttcaaatccaggtccgacagctggaactgtccggcagaactggtggg
acaggcacaggaacggcaagtctgactgcactggataaccaagtgaagaggcatgacaac
ctcctcagcgtccacgatgtgcgcttggcagatatggaccttcgcttccaagtgctcgaa
acggcaagctacaatggaaaactgatctggaaaatccgcgattacacacggcgaaaacag
gaggctgttagtggaaaaacgttgtccttgtatagccagccattttacactggatacttt
ggctacaagatgtgcgctcgagtttacctcaatggagatggtatgggtaaagggactcat
ttatcgttgttttttgtcgttatgaggggagagtacgacgcactgttgccatggcctttt
aaacagaaagtaacgttgatgctgttggaccaagctccggccagtcgccatttaggtgat
gcctttaagccagatccgaacagcagtagttttaagaagccggtgagcgacatgaatatt
gcctcaggctgcccgctctttgttacacagactgtcttggaaagtgggacgtatattaaa
gatgacactatcttcataaaagtagttgttgatacctcagatttgccggacccatga
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