Scyliorhinus canicula (smaller spotted catshark): 119954110
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Entry
119954110 CDS
T11175
Symbol
eftud2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119954110 (eftud2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
scau03041
]
119954110 (eftud2)
Spliceosome [BR:
scau03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119954110 (eftud2)
Complex C
U5 SnRNP specific factors
119954110 (eftud2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
119954110
NCBI-ProteinID:
XP_038634928
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All DBs
Position
19:35337959..35482004
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AA seq
968 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEEDGLGRDDDADEDDDDDDEAGDQDDDHVGMEVVLHEDKK
YYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKKKKFTLMEQELPETVYDMEFLADLMD
NSELIRNITLCGHLHHGKTNFVDCLIEQTHPEIRKKDDRDLRYTDILFTEQERGVGIKST
PVTMVLPDSKGKSYLFNIMDTPGHVNFSDEVTAGFRISDGMVLFIDAAEGVMLNTERLIK
HAVQEKLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLLSVYSTDENLIVSPLL
GNVCFASSQYSICFTLGSFAKIYADTYGDINYMEFAKRLWGDIYFNPKTRKFTKKAPTSN
SQRSFVEFILEPVYKILSQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVCKKFF
GDFTGLVDMCVQHIPSPQSGARSKIEHTYTGGLDLDLGETMLECDPDGPLMCHTTKMYST
EDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIEVNRV
PAGNWVLIEGVDQPIVKTATITEPRGNDEAQIFRPLKFNTASVIKIAVEPVNPSELPKML
DGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTFCE
TVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKYDW
DLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGYVKDSIVQGFQWGTREGPLCDEPI
RNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADCVS
AVYTVLARRRGHVTQDAPIPGSPLYTIKAFVPAIDSFGFETDLRTHTQGQAFSLSVFHHW
QIVPGDPLDKSIIIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELAKQ
DVVLNYPL
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggatacggacctgtatgatgaatttggcaactacattgggccagaattggattctgat
gaggaagatggcctaggtagagacgatgatgcggatgaggatgacgatgacgatgatgaa
gctggagatcaggatgatgatcatgttggaatggaggtggtgttacacgaggataagaag
tattaccccacagcagaggaggtgtatgggcctgaggtagagacaattgtccaagaggaa
gatactcagccacttactgaacctatcattaaacctgtcaagaaaaagaagtttactttg
atggaacaggagttaccagaaacagtgtatgacatggaattccttgcagatttgatggac
aattctgagctcattcggaacattactctctgtgggcatttgcatcatggcaagacaaac
tttgttgattgcttaattgaacagactcacccagaaattcgtaaaaaggatgaccgagat
cttcgctacactgacatactttttacagagcaggagagaggagtaggtataaagagtaca
ccagtcacaatggtccttccagattccaagggcaaatcctatctcttcaacatcatggat
accccaggacatgtaaacttctctgatgaggtcacagccggtttccggatctctgatggc
atggtacttttcatcgatgcagcagagggggtgatgctgaacacagagagattgattaaa
catgcggtacaggagaagctagctgttaccgtttgtattaataaaatagacagactcatt
ttggaactaaaactgcctccaactgatgcatattacaagctacgtcacattgtggatgaa
gtcaatgggttgcttagtgtctattcaacagatgaaaacctgattgtttcccctctgttg
ggtaatgtttgctttgccagttctcagtacagtatttgcttcaccttgggatcctttgcc
aagatttatgctgatacatatggggacattaactatatggagtttgcaaagcgtctatgg
ggtgacatttacttcaatccaaaaacgcggaagtttactaagaaggcaccaaccagtaat
tctcagagaagttttgtagagttcatcctggagcctgtctataagattctttctcaggtt
gttggtgatgtcgatactactctgccacgcacattggatgagcttggtattcatttaaca
aaagaggaattaaagctcaacatcaggcccttgctgcgactcgtctgcaagaaattcttt
ggagacttcacaggcttggtagatatgtgtgtgcaacatataccatccccacaatctggt
gcaaggagtaaaatcgaacatacatatacaggtggcctggatttggatcttggcgaaact
atgctagaatgtgatcctgatggccctctgatgtgccacaccaccaagatgtacagtaca
gaggatggtgtacagttccatgcatttggtagggtgttgagtggaaccattcatgccggg
cagccagtgaaagtacttggcgagaactacacactggaggatgaggaagattcacaaatc
tgcaccgtcggcaggctgtggatttcagttgcaagatatcatatcgaggttaacagagtt
ccagctggtaactgggttctcatagaaggagtagaccaacccatcgtaaagaccgctacc
atcacagagccaagaggcaatgatgaggctcagatcttcaggcctctcaagtttaataca
gcatcagtcattaaaatagctgtggaacctgtcaacccatctgagcttccaaaaatgtta
gacggcttaagaaaagtcaacaaaagctacccatcattaactactaaggtagaagagtct
ggggagcatgtaatactggggactggtgaactctacctggactgtgtgatgcatgatctt
aggaagatgtattctgaaatcgacataaaggtggctgaccctgttgttacattctgtgaa
actgttgtggaaacctcatctttgaaatgttttgcagagacacccaacaaaaagaataag
atcacaatgattgcagaacctctagagaaaggtttggcagaagatattgagaatgaagtg
gtccaaattacctggaacaggaaaaaactgggtgaatttttccagacaaagtacgattgg
gatttattggctgcccgttccatttgggcttttggacctgatactacaggccctaacatt
ttggttgatgacacattgccatcagaggtggataaagcacttttaggttacgtgaaggac
agcattgtccaaggattccagtggggaactcgagaaggaccactttgtgatgaaccaatt
cgtaacgtgaagttcaagatccttgatgcagtaatagctcaagagccattgcaccgaggt
ggagggcaaattattccaacagccagacgagtagtgtattcagctttcctgatggccaca
cctcgtctgatggagccttattattttgtggaggtgcaggcaccagctgactgtgtttca
gcagtttatacagtcttggctcgcaggagaggccatgtgacacaggatgcacccatccca
ggttctccactttatacaatcaaagcatttgtaccagctattgattcatttggttttgaa
acggacctacgaacacacacacagggacaagcattctccctctcagtcttccaccattgg
cagattgtgcctggtgatcccttggacaagagcatcataatcagacccttggaaccacaa
cctgcacctcatctggccagagagttcatgatcaaaacaaggcggcgaaagggtctcagt
gaagatgtcagtatcagcaagtttttcgatgatcctatgttgctggaacttgcaaagcag
gacgtggttctcaattatcccttgtaa
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