Scyliorhinus canicula (smaller spotted catshark): 119954711
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Entry
119954711 CDS
T11175
Symbol
lemd3
Name
(RefSeq) LOW QUALITY PROTEIN: inner nuclear membrane protein Man1
KO
K19410
inner nuclear membrane protein Man1
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
119954711 (lemd3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
scau04812
]
119954711 (lemd3)
Cytoskeleton proteins [BR:
scau04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filament-binding proteins
119954711 (lemd3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MSC
LEM
RBM39linker
PspB
Motif
Other DBs
NCBI-GeneID:
119954711
NCBI-ProteinID:
XP_038636121
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Position
20:complement(17900782..17956741)
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AA seq
837 aa
AA seq
DB search
MAAQLTDAELFAELKKLGLVPGPVTESTRPVYLKKLKKLREERGARPKTRNGGGSGGGGG
TGLGLGGASTATTTPPSSKLLGFSSDESDAEANSRSQAGKRASRTEKLSGECPRPRPSHS
KGRSTPPRMANSNNNSSGGGSGAGACPPAGRSNSTPWWRPSPGGGGGAQEAPEEEGRPPG
AEPLSNNSGGRVSYVRDGNYSDSEDERQERGRRPNSRRSQSKKPLPPSGTVNSHNSGAMV
EESGAGRRGGARRVHDVAGGPYCLDTRRDQLEEEEEDQRETDATAEPTMLLRFRNSSSRK
IGPGVLAAERENLYQSSTRNNNHVGTLSPSIHNSNFITSRSGPSSSLLINANHSNHTGSN
HIYSTYNRKGSREPEEELLQQFKREGGSATGGFSAHYLSMFLLTAACLFFLILGLTYIRM
RGSGGTEGGILNVKSQSFGIDDKVEEKRVILIILHRLHDHLAKIAGDYDCGHHVYYKNRS
LSVQDAAEYVTVHDANHEEKFNGSLQWILQSTDDFGIKLLGSDSNAKVNAVSEVQYLEST
HPQMSFICRFRRAFLTVLHRMFIFLVGVGIVWGVLHYMRYRWRKEEAETRQMYDMVERII
DVLRSHNEACQENKDLQPYLPIPHVRDSLIPPQNRNKMKKAWERAVTFVETNESRIRKET
QRIGGGDFLVWRWTQPSSTCDKITVVPSKVWQGKAFHLDGRNSPPNSLTPCLKIRNMFDP
VMEIGDDWHVAIQEAILEKCSDNEGIVHIAVDKNSREGCVYVKCLSPDFAGKAFKALHGS
WFDGKLVTVKYLRLDXYHYRFPQSVHCNTPLKPSNRYMNSMSHLRLLTNTANSQGAS
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagttaacggacgcggaattgtttgcggaattgaaaaagttgggcttggtg
ccgggcccggtgacagagagcacgcgccccgtctacctgaagaagctcaagaagctgcgc
gaggagcgcggcgcgcggcccaaaacccggaacggcggcggcagcggcggcggaggaggg
acaggcctgggcctcggcggggccagcaccgccaccaccacaccccccagcagcaagctc
ctgggcttcagctcggacgagtcggacgccgaggccaacagccgaagccaggccggcaag
agggcgagccggacggagaagctctcgggcgagtgcccccgcccgcggcctagtcacagc
aaagggaggagcacgcctcccagaatggcgaacagcaacaataacagcagcggcggtgga
agcggagccggggcttgtcctccggccgggagaagcaactccaccccctggtggaggccg
agcccggggggcggtggtggcgcccaagaggcgccggaggaagagggacggcctccggga
gcggagccgctcagcaacaatagcggcggccgagtgtcctacgtccgtgacggcaactac
tcagactccgaggacgaacggcaagagcgaggccggaggcccaactccaggcggagccag
tccaaaaagccgctgcccccgtcgggcaccgtcaacagtcataactcgggggcgatggtg
gaagagagcggcgccggcaggagaggcggcgccaggcgggtccacgacgtcgccggcggt
ccttactgtctagacacacggagagaccaactggaggaggaggaggaggatcagagggag
acagacgccacagcggagcccaccatgttattgcggttccgtaattcctcctccagaaag
attggcccaggagtcctggcagcagagagggagaatctgtaccagagcagcaccagaaac
aataatcatgtcggcaccctaagtccatccattcacaacagcaattttatcaccagtcga
agtggcccctcgtcctcccttctgatcaatgccaatcactcaaaccacacgggcagtaac
cacatttacagtacttacaatcgtaaaggctccagagagcctgaggaggagttgctacag
cagtttaaaagggaggggggttcggcgaccggtggattcagtgcacactacctatccatg
tttcttttgactgctgcatgtctgtttttcctcatattgggacttacatatataaggatg
aggggttcaggaggaacagaaggaggaattcttaacgtaaaatctcagtcatttggaata
gatgataaggttgaagaaaaaagagtaattttgattattcttcatagactgcatgatcat
ctagcaaaaatagcaggagactatgattgcggacatcatgtctattataaaaacagaagt
ctttctgtccaagatgctgctgaatatgtgactgtccatgatgccaatcatgaagagaaa
tttaacggttcactacagtggattttacagagtacagatgactttggtataaagttgctt
ggcagcgactcaaatgcaaaggtaaatgcagtgagtgaagtacagtacttggaatccacc
catccacagatgtccttcatatgtcgctttcgtcgtgcatttttaactgtcttgcacaga
atgtttatatttcttgtgggtgtgggaattgtgtggggagtgcttcattacatgaggtac
cgttggcggaaggaagaggcagaaaccaggcagatgtatgacatggtggaaaggatcata
gatgttctgcgaagccataatgaagcctgccaagaaaataaggatttgcagccctatttg
cctattccacatgtacgtgattctcttataccaccccagaataggaacaaaatgaaaaaa
gcgtgggaaagagctgtgacttttgttgaaaccaatgagtcccgtattcggaaagaaacc
caaagaataggcggaggagatttcttagtttggaggtggactcaaccatcttcaacatgt
gataaaattacagttgtgccgtccaaagtatggcaaggaaaagccttccaccttgatggt
agaaattcgccacctaacagtttgacgccctgtttaaagatccgcaacatgtttgaccca
gtcatggagattggggatgactggcatgtcgcaattcaggaagcaatcctagaaaagtgc
agtgacaatgagggaattgttcatattgcagtggataagaattcgcgtgagggttgtgtg
tacgtgaagtgtttgtctccagattttgctggcaaggcttttaaagcacttcatggctca
tggtttgatggaaaactagtgactgtaaaatatctgagactagatncgtaccattatcgt
ttccctcagtctgtccattgcaacactcccttaaagccatcaaataggtacatgaattca
atgtcacatctgcgtcttctgaccaacacagctaactcacaaggagcctcatga
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