KEGG   Scyliorhinus canicula (smaller spotted catshark): 119961852
Entry
119961852         CDS       T11175                                 
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
scau  Scyliorhinus canicula (smaller spotted catshark)
Pathway
scau03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:scau00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    119961852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:scau03000]
    119961852
   04121 Ubiquitin system [BR:scau04121]
    119961852
   03036 Chromosome and associated proteins [BR:scau03036]
    119961852
Enzymes [BR:scau01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     119961852
Transcription factors [BR:scau03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    119961852
Ubiquitin system [BR:scau04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     119961852
Chromosome and associated proteins [BR:scau03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    119961852
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     119961852
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like JHD F-box DUF7885 JmjC Cupin_8
Other DBs
NCBI-GeneID: 119961852
NCBI-ProteinID: XP_038645210
LinkDB
Position
1:complement(41406596..41697037)
AA seq 1342 aa
MVPGADSGDFFSSHFRPPPSNTTHKPPSAVLIEGNRPDTERTFCRRRYDNEDLSDDDIAS
MRTFDVEEKLSIASYNSSYVHFMKGKDFTLEYVQRETIQVPIIFRDKDGLGIKTPESDFS
VRDVKLFVGSRRIVDVMDVSTQKGIEMSMSQWVKYYETPEVEREKLYNVISLEFSHTKLE
NLVKRPNVVDLVDWVDNMWPRHLKEKQMDSTNAIAEMKYPKVQKDEGLQWNFEVSFKCKF
LLYKYCLMSVKGCYTDFHIDFGGTSVWYHILRGGKVFWLVPPTSHNLEIYEEWVLSGKQG
DIFLGDRVDGCQRIELKQGYTFLIPSGWIHAVYTPVDTLVFGGNFLHSFNIPMQLHIYGI
EDRTRVNAKFRYPFYYEMCWYVLERYVFCLTKRSHLTKQYQRESMLIDTEKKPNTESPSS
DSRLDMDEESSDVRVKEEKDETRDKMSLQSTKIFGDDSPSPNSAQSEGNESSGKTQKLTK
RLKRTLSNDSDDSTKSPMLTDCPKTPSGSPDPSQPVSEGSNKWIHLTEFELKGLKALVEK
LESLPENKKCVPDGIEDPYALLEDMKTVLEEHADDDQKLAITGVPIVTWPKKTVKNRAVG
RPKGKLGTSAAVKLAANRATAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMK
QSCIMRQCIAPVLPHTAVCLICGEAGKEDTVEAKEEKFNFMLMECSICNEIVHPGCLKVK
QLKVQDGDGVVNEELPNCWECPKCNHEGKTGKVYKQKRGPGFKYASNLPGSLLKEQRQNR
EHKDSAETTKKKGDREENSKRRSEEHPKKRSDDSVPRRKSEDGLVMRKRRVVDRTSEPIA
RKKFKIGKEEKLLRKKKKSLQPNEDQPPTIKPLRSIKQEPEDDPPETPQKTKESDQSRSS
SPRAGPSTESAETKEKKSGRFKEKRKKRLHNKELSKELSKELNQEIHKTETSLANENHQP
IKSEGDSEKVEKPKRLLANSERLHRLSKGLNGTPRFRHQLTTSLRRAPRVITRPPPSVSP
TKSIQMERHVVRPPPVSPPPDSLPLDDGEDHVMQREVWMAVFGYLNRKDLCICMRVCKTW
NRWCCDKRLWTKIDLNRCKSITPLMLSGIIRRQPVTLDLSWTNISKKQLTWLINRLPGLK
DLVVSGCSWAAISALCSSSCPLLRTMDLRWVEGLKDAQMRDLLSPPTDNRPGQIDNRSKL
RNVVDLRLAGLDITDATLRLIIRHMPMLSKLDLSYCNHLTDQSINLLTAVGTTTRDSLTE
VNLSVCNKVTDQCLTYFKRCGNICRIDLRYCKQIQKLKVNGKITNGQHCCRTAPRTWVRS
RPWVTVRVEFAQPKDVQGKWIG
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtgccgggggcggactccggggattttttttcctcccattttcgaccccctccatcc
aacacaacacacaaacctcccagtgcagttctcatagaaggaaatcgacccgataccgaa
cgcacattttgtagaaggcgatatgacaatgaggacctctcagacgatgacatagccagc
atgaggacttttgatgtggaggaaaagcttagtattgcctcatacaattcaagttacgtg
cactttatgaaaggaaaagattttacccttgaatatgtgcagagagagactatccaggtc
cccattatcttcagggacaaagatggtctaggaatcaaaacaccagaaagcgatttcagt
gtcagggatgtaaaactgtttgttgggagtcgtcgtattgtggatgtcatggatgttagt
acacagaaagggattgagatgagcatgtcacaatgggtgaaatactacgaaacgccagag
gtggaaagagagaagctctataatgttataagcctggaattcagtcatacgaaacttgag
aacctggtcaagcgacccaatgtggtggacttggtagactgggtggacaacatgtggcca
cgtcatttaaaagagaagcaaatggactccaccaatgcaatcgcagagatgaaatatccc
aaagttcagaaagatgaaggcctccaatggaattttgaagtgtcttttaaatgtaaattt
ctgctatacaagtactgcttaatgagcgtcaaagggtgctacacagattttcacattgat
tttggtggcacttctgtctggtatcacatacttcgaggaggaaaggtattctggttagtt
ccccctacgtcgcacaatctggagatttatgaagagtgggttctgtcaggaaagcaaggt
gatattttccttggggacagagtggacggatgccaacgcattgagttaaaacaaggatat
acgtttctgatcccttcaggatggatccatgctgtatacacgccagtagacacattggtt
tttggtggaaatttcctgcacagctttaacattcctatgcagcttcatatctatggcatt
gaggatcgaactcgggttaatgccaagttccgctatcctttctactatgaaatgtgctgg
tatgtcctggaacgatatgtgttctgtttgacaaaacggtctcatctcaccaaacaatac
cagagggaatcaatgttaatcgatacagagaagaaaccaaatacagagagcccttcatca
gattcccgactagacatggatgaagaatcttctgatgtgcgagtcaaggaggagaaagat
gagacgagagacaaaatgagccttcaaagcacaaaaatatttggtgatgattcgccttct
cctaacagtgcacaatcagaaggaaatgaaagctccgggaagacacagaaattgacaaag
cgtttaaagcggactttgtccaatgactctgatgatagcaccaagtcaccaatgctgaca
gactgtcccaagacaccaagcggatctcctgatccctcccagccagtgtccgaggggtcc
aacaaatggattcacctgaccgagtttgagttgaaagggttaaaagcgcttgtcgaaaaa
ctcgagtctttgccagagaataaaaaatgtgtccccgatgggatagaagatccttacgcc
cttctggaggatatgaagacggtgctggaggaacatgctgatgatgatcagaaactggct
atcactggggtcccaattgtaacatggccaaagaagaccgtgaagaatagagcagtagga
aggccaaaagggaagcttggaacttctgcagctgtgaaacttgctgcaaacagggctaca
gctggagcacgcaggaggaggacaagatgtcgaaaatgcgaggcatgtctcagaacagaa
tgcggagagtgtcatttctgcaaggacatgaagaagtttggaggacctgggagaatgaaa
cagtcctgtatcatgagacagtgtattgctccggtcctaccacatacagccgtctgtctc
atttgtggagaagcaggaaaagaagacactgtggaagcaaaggaggaaaagtttaatttc
atgctgatggaatgctcaatttgtaatgaaattgtgcatcctggctgcctgaaggtaaag
cagttaaaggtacaagatggagatggagtagtcaatgaagaacttccaaactgctgggaa
tgtccaaagtgtaaccatgaaggaaagacagggaaagtctataagcagaaaagagggcca
gggtttaagtatgcctccaacctcccaggttcactactgaaggagcagaggcaaaacaga
gaacacaaggactcggcagagacgaccaagaaaaagggagaccgagaggaaaattccaaa
aggaggtcagaggaacatcccaagaaaagatccgatgactctgttccaagaaggaaatct
gaggatgggcttgtgatgcgaaaacggagagttgttgatagaacatctgaaccaattgcc
agaaaaaagtttaagattggaaaggaagagaaattgctgaggaaaaagaaaaaatccttg
caaccaaatgaagaccagccacctacgatcaaaccactgcggagtatcaagcaggagcct
gaggatgatccaccagagacacctcagaaaacaaaggagagtgaccagtccagatcaagc
tctccgagagctggtcccagcactgaaagtgcagagaccaaagagaagaaaagtgggaga
tttaaagagaaacgcaagaagcgattgcacaataaagaactcagtaaagaactaagcaaa
gaactcaatcaggaaattcataaaactgagaccagcctggcaaatgaaaatcaccaaccg
attaaatctgaaggagatagtgaaaaagtagagaagcctaaacgactgctagcaaacagt
gaaagactgcacaggctaagcaaaggattaaatggaactcccagatttagacatcagctt
accacgagcttgaggcgagctcccagggtgatcacccgaccaccaccctctgtgtcccca
actaaatccattcaaatggagcgacatgtggtgcggcctccacctgtcagtccaccccca
gactctctgcccctcgatgatggagaggaccatgtgatgcaaagggaagtgtggatggct
gtttttggctaccttaatcgcaaagatttatgtatttgcatgagagtctgtaaaacctgg
aacagatggtgctgtgacaagaggctttggaccaagattgatttaaaccggtgtaaatca
atcacacctcttatgctcagtggcatcattaggaggcaacctgtaacccttgacctgagc
tggacaaatatatcgaaaaaacagttaacttggcttatcaacaggctgccaggtcttaaa
gatttggttgtttcaggctgctcctgggcagcaatttctgcactttgcagctctagttgt
cccttactgagaacaatggatctcagatgggtggaaggattgaaagatgctcaaatgagg
gatctgctttcacctccaactgacaacagaccaggtcaaattgacaatcgcagcaagcta
cgaaatgtggtagaccttcgtctggctggactggacattacagatgcaacactccggctt
attattaggcacatgccaatgctttccaaattggaccttagttactgcaatcatctgaca
gatcaatcaattaaccttctaacagcagttggcaccaccacgcgagattctctaacagaa
gtcaatctatcagtttgcaataaagtcactgaccagtgcctaacctatttcaaacgctgt
ggtaacatctgccgaatagacctccgttactgcaagcagatacagaagctgaaagtaaat
ggcaagataacaaatggacagcactgctgccgaacagcaccaaggacttgggttcgatcc
cggccctgggtcactgtccgtgtggagtttgcacaacccaaagatgtgcaaggtaagtgg
attggctag

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