Scyliorhinus canicula (smaller spotted catshark): 119963356
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Entry
119963356 CDS
T11175
Name
(RefSeq) short transient receptor potential channel 3 isoform X1
KO
K04966
transient receptor potential cation channel subfamily C member 3
Organism
scau Scyliorhinus canicula (smaller spotted catshark)
Brite
KEGG Orthology (KO) [BR:
scau00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
scau04040
]
119963356
Ion channels [BR:
scau04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
119963356
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GFIT
Motif
Pfam:
TRP_2
Ion_trans
PKD_channel
Ank_2
Ank
Ank_4
Ank_5
Motif
Other DBs
NCBI-GeneID:
119963356
NCBI-ProteinID:
XP_038648295
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Position
3:complement(229037871..229242334)
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AA seq
931 aa
AA seq
DB search
MSDEDRRCQAQITVSFDGEESRRDWKEKNGDLSSQYYNPIAGDRKAHGYSDTMQSISNAS
AMQRRMTVLREKGRRQAIRGPAFMFNDKGTSLTPEEERFLDAAEYGNIPVVRRMLEESKS
LNVNCVDYMGQNALQLAVGNEHLEVTELLLKRDNLARIGDALLLAISKGYIRIVEAILNH
SGFEPSNRLTLSPCEQEMQDDDFYAYDEDGTRFSPDITPIILAAHCQKYEVVHMLLMKGA
RIEKPHDYFCKCTECVEKQKHDSFSHSRSRINAYKGLASPAYLSLSSEDPVHTALELSNE
LAKLANIEKEFKLKNKKIELGKGPHKVTSSNDYRKLSMQCKDFVVGVLDLCRDSEEVEAI
LNGDVEAEQDEGHHNQRAGLTRVKLAIKYEVKKFVAHPNCQQQLLTIWYENLSGLREQTI
AMKCLVVLVIALGLPFLSIGYWIAPCSKLGKMLRSPFMKFVMHAASFIIFLCLLVFNASD
RFEGIKTLPNVTVTDYPKQVFRMKTTMFSWTEMLIMVWILGMMWTECKEIWTEGPREYIF
QMWNLLDFGMLSIFIAAFTARFLAFLEASKAQQYVNEHVEESDLSLVTLPPEVEYYTYAR
DRWVPSDPQIISEGLYAIAVVLSFSRIAYILPANESFGPLQISLGRTVKDIFKFMVIFIM
VFLAFMIGMFILYSYYLGAKVNSAFTTVEESFKTLFWSIFGLSEVSSVVLKYDHKFIENI
GYILYGIYNVTMVVVLLNMLIAMINSSYQEIEDDADVEWKFARSKLWLFYFDHGKTLPPP
FSLMPTPKACISLILRIKNCLFGLFKCRRKRLKRDVEIGMLNSKSRLNLFAQSNLRISET
QSFNSILINQPTRYQQIMKRLIKRYVLKAQVDKENDEVNEGELKEIKQDISSLRYELLED
KSQATEELAFLIQKLGEKLNTCLTKQKTPTT
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgaagatagaaggtgtcaggctcagataacagtgtcctttgatggagaggag
agccggcgggactggaaggagaagaatggggatttgagttcacagtattacaacccaata
gcgggggacaggaaggcacatggatactccgataccatgcaaagtataagtaacgcatct
gcaatgcagcggagaatgacagtgctgcgggagaagggaaggaggcaagccatccgtggt
ccagcattcatgttcaatgataagggtacaagcctaactccagaagaggaacgttttttg
gatgcagctgaatatggcaacatacctgttgttcggagaatgctggaggagagcaagtcg
ctgaatgttaattgtgttgattacatgggccagaatgcccttcagctagcggttggaaat
gaacatttggaagtaacggagcttcttctaaagagggataatttggctcgaatcggagat
gcattattacttgctatcagtaaggggtatatacgaattgtggaagcaattttgaatcac
tctggatttgagcccagtaatcgcctgacccttagcccatgtgaacaagagatgcaagat
gatgatttttatgcctacgatgaagatggcaccagattttctccagatatcaccccaatc
attctggctgcccactgccagaaatatgaggtggtgcacatgctgttgatgaaaggggca
aggattgagaaaccgcacgactatttctgtaaatgcactgaatgtgtggagaaacaaaag
cacgattcatttagtcattccagatcaaggatcaatgcgtacaaaggattagcaagccct
gcctatttgtctttgtctagtgaggatccagtacatactgcgctggaacttagtaacgaa
ctagccaagttggcaaatattgaaaaagaattcaagcttaaaaacaagaaaattgagttg
ggaaagggtccacacaaggtgacatcatcgaatgactaccgcaagttatctatgcaatgc
aaagactttgttgttggtgttcttgacctgtgccgagacagtgaagaagttgaagctatt
ctgaatggtgatgtggaagctgagcaagatgaaggacaccacaatcaaagagcaggatta
actcgtgtcaaacttgccattaaatatgaagtcaaaaagtttgttgcccaccccaattgc
caacagcaattactcacaatatggtatgaaaacctctcaggattacgggagcagacaata
gctatgaaatgccttgtggtgctcgttattgcacttgggctcccatttctttcgattggc
tattggattgcaccatgcagcaagctggggaagatgctaagaagtcccttcatgaagttt
gtgatgcatgcagcgtccttcatcatctttctgtgtttactagtatttaatgcctctgac
agatttgaaggcatcaaaaccttacccaatgtcactgttacggattaccctaaacaagtc
ttcagaatgaaaaccacaatgttttcttggacggaaatgttaatcatggtgtggatattg
ggtatgatgtggactgagtgtaaggaaatctggacagaagggccacgggaatacattttc
caaatgtggaatcttttagattttggaatgctatcaatttttatcgctgcatttacagca
agatttctggcatttctggaagcttctaaagcacagcagtatgtaaacgaacatgttgag
gagagtgatctttcccttgtaacacttccaccagaagttgaatactatacgtacgccaga
gatagatgggttccttccgatcctcagatcatatctgaaggcctctatgcaatagctgtt
gtccttagtttttcacgaatcgcttatatcctgcctgcaaacgaaagctttggtccatta
caaatttcgcttggaaggacagtgaaagacatattcaaattcatggtcatttttattatg
gtgtttcttgctttcatgattgggatgtttatcctgtattcctactaccttggtgcaaaa
gtaaattctgccttcacaacagttgaagaaagtttcaagacactattctggtcaatcttt
ggtttgtcggaagtatcttctgttgttctcaaatatgaccacaaattcatcgagaacatt
ggatatattttgtatggaatatacaatgtcactatggtggtggtcttgctcaacatgctg
atcgccatgatcaatagttcatatcaggaaattgaggatgatgctgatgtcgaatggaaa
tttgctcgttcaaagctgtggttgttctactttgaccacgggaaaacattgccccctcca
ttcagtcttatgcctactccaaaagcatgcatcagtttaatactaagaatcaaaaactgt
ctctttggtctgttcaaatgcagaaggaaaagactgaagagagatgtagaaattggaatg
ttgaattcaaagtccaggctcaatctttttgcacagtcaaatctaaggatttcagaaacc
caaagtttcaacagcattctaataaatcaacccacgagatatcagcaaataatgaaacga
ctgattaaacggtatgtcttgaaagcacaagttgataaagaaaacgatgaagttaatgaa
ggtgaactgaaagaaattaaacaggatatctcaagtcttcgatacgaacttttagaagac
aagtctcaagcaaccgaggagctggctttcctcattcaaaaacttggtgaaaaacttaat
acctgtctgacaaaacaaaaaacaccaacgacttaa
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